Bco-kieppi

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FW: Tutkimustuote-esittely Biocenterissä tiistaina 20.9.
by Pirkko Huhtala 13 Sep '22

13 Sep '22

Tutkimustuote-esittely: Oulun yliopisto Biocenter, ti 20.9. klo 10-14 Avaa viesti selaimessa<https://app.bwz.se/triolab/b/m/?l=abb9fe1a-6d36-4135-b7a5-e6d8e6483a6e&r=44…>. [134 Triolab logo color grey RGB] [315 soluja tummennettu 560 Apsis] Triolabilta löytyy nykyaikaisia menetelmiä hyödyntäviä ratkaisuja mm. solututkimukseen, lääkeainetutkimukseen, laboratorioautomatiikkaan ja mikrobiologiaan. Keskustelemme mielellämme toiveistasi ja suunnitelmistasi tutkimuksesi kehittämiseksi! [368 Spark Tec006126] Tutkimustuote-esittely Tiistai 20.9. klo 10-14 Biocenter, neuvotteluhuone 487B (4. krs) Tule käymään, kun sinulle sopii! Esittelyssä paikan päällä seuraavat laitemallit: Tecan Spark-monileimalukija Erinomainen suorituskyky ja joustavuus D300e Digital Dispenser -automaattiannostelija Toistettavuutta ja ajansäästöä jopa pikolitratasoisten reaktioiden luontiin HydroFlex-kuoppalevypesuri Erilaisiin tarpeisiin joustavasti räätälöitävä pesuri Infinite F50- absorbanssilukija Kompakti ja luotettava absorbanssilukija LED-valonlähteellä Luminex Guava Muse -virtaussytometri Laadukkaat soluanalyysit monipuolisesti, mutta edullisesti Anvajo fluidlab R-300 -solulaskin-spektrometri Pieni kannettava laite, jossa yhdistyy spektrometri ja automaattinen solulaskin Triolabin koko tutkimustuotevalikoimaan pääset tutustumaan nettisivuillamme: www.triolab.fi<https://app.bwz.se/triolab/b/m/?l=e403c98b-fed3-4988-800a-e8ec3bfd9772&r=44…>. Nähdään ensi tiistaina tai ota yhteyttä, niin jutellaan lisää! Ystävällisin terveisin [236 Anna Paaso 1903110161 920px] Anna Paaso Tutkimustuotteet anna.paaso(a)triolab.fi<mailto:anna.paaso@triolab.fi> 040 832 0349<https://app.bwz.se/triolab/b/m/?l=6cb20ee2-a968-4f3a-b6e5-d2f5b804e753&r=44…> [249 Tom Rontu 1901290284 920px] Tom Rontu Automaatiotuotteet tom.rontu(a)triolab.fi<mailto:tom.rontu@triolab.fi> 0400 811 030<https://app.bwz.se/triolab/b/m/?l=81b4fa9f-ed54-4037-ae72-844c5dee49ff&r=44…> Triolab Oy • Mustionkatu 2, Turku • 0201 226 600<https://app.bwz.se/triolab/b/m/?l=c82fe934-150b-481d-a0cd-887018c80bf4&r=44…> • info(a)triolab.fi<mailto:info@triolab.fi> • www.triolab.fi<https://app.bwz.se/triolab/b/m/?l=03efbdb5-edfe-44fe-a7bf-888def741e56&r=44…> [Seuraa meitä Facebookissa]<https://app.bwz.se/triolab/b/m/?l=e2b4f734-dd49-48fb-8054-c6975f8cb5d1&r=44…> [Seuraa meitä Linkedinissä]<https://app.bwz.se/triolab/b/m/?l=14fdcf31-8495-44dd-8162-3e98341edf66&r=44…> Haluaisin poistua tältä postituslistalta.<https://app.bwz.se/triolab/b/m/?l=4efc72b8-bbd0-4620-8984-30abc5431e65&r=44…>

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Punaisen Ristin veripalvelu ma 26.9.2022 klo 11-16 Aapistie 5A aulassa
by Teija Luoto 12 Sep '22

12 Sep '22

[cid:image001.png@01D8C683.EBCBB140] Teija Luoto, Management assistant Biocenter Oulu, University of Oulu Tel. +358 2 9448 6103 Street address: Aapistie 5A, 90220 Oulu, Finland Mail address: P.O. Box 5000, FI-90014 University of Oulu, Finland URL: http://www.oulu.fi/biocenter www.oulu.fi<http://www.oulu.fi/yliopisto> [cid:image002.jpg@01D8C683.EBCBB140] [cid:image003.jpg@01D8C683.EBCBB140] Follow us on Facebook<https://www.facebook.com/unioulu/>, Instagram<https://www.instagram.com/unioulu/?hl=fi>, Linkedin<https://www.linkedin.com/school/university-of-oulu/> and Twitter<https://twitter.com/unioulu>. The content of this message is confidential. If you are not a recipient indicated or intended in this message or you think this message may have been addressed to you in error, please inform us by an email reply and then delete the message. In such case it is forbidden to copy, forward, or in any way reveal the contents of this message to anyone.

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Sigrid Juséliuksen Säätiön syksyn apurahahaut 2022 - uusi kategoria varttuneille kliinisille tutkijoille - Sigrid Juselius Foundation
by Jaana Liimatainen 08 Sep '22

08 Sep '22

Hyvät tutkijat / Dear researchers Sigrid Juséliuksen Säätiöllä on syksyllä tulossa lääketieteen tutkijoille useita apurahahakuja. Ensimmäiset haut ovat auki 15.9.-15.10.2022 seuraavissa apurahakategorioissa: - Varttuneen tutkijan toimi - Varttuneen kliinisen tutkijan toimi (uusi) - Symposium-apurahat - Fellowship- apurahat - Senior Fellowship -apurahat. Marraskuussa (1-30.11.2022) ovat lisäksi hakuvuorossa säätiön 1-3-vuotiset, tutkimusryhmille tarkoitetut apurahat, sekä Visiting professor-apuraha vieraileville tutkijoille. Lisätietoja ja hakuohjeet: https://www.sigridjuselius.fi/haettavat-apurahat/<https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.sigri…>. *** The Sigrid Juselius Foundation call is open 15.9.-15.10.2022 for - Senior researcher post - Senior Clinical researcher post (new) - Symposium grants - Fellowship grants - Senior Fellowship grants In November (1-30.11.2022) the Foundation will open the calls for 1–3-year grants and for Visiting professor. More info: https://www.sigridjuselius.fi/en/available-grants/ RIIKKA LUOMA Apurahakoordinaattori +358 45 675 9884 riikka.luoma(a)sigridjuselius.fi<mailto:riikka.luoma@sigridjuselius.fi> Sigrid Juséliuksen Säätiö Aleksanterinkatu 48 B 00100 Helsinki [cid:image001.png@01D8C386.023150D0]

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scRNA-Seq data analysis courses
by Katri Pylkäs 05 Sep '22

05 Sep '22

Dear all, For those interested in scRNA-Seq, CSC is organizing two data analysis courses (detailed information below). BR, Katri From: bioclients-request(a)postit.csc.fi <bioclients-request(a)postit.csc.fi> On Behalf Of Eija Korpelainen Sent: Monday, September 5, 2022 8:51 AM To: bioclients <bioclients(a)postit.csc.fi> Subject: [BioClients] Bioinformatics courses at CSC Dear all, Please note that registration is now open for two single-cell RNA-seq data analysis courses described below (application deadline 8.9.2022). Both courses consist of lectures and exercises. The lectures are pre-recorded, and participants are requested to view the videos prior to the course. You might also like to save the date for the upcoming "Microbiome analysis with R/Bioconductor" online course 28.11-2.12.2022. 1. Single-cell RNA-seq data analysis using R 6.10.2022 This course introduces scRNA-seq data analysis concepts and R packages. It covers the processing of transcript counts from quality control and filtering to dimensional reduction, clustering, cell type identification and differential expression analysis. You should have some experience in using R in order to participate in this course. Teachers: Bishwa Ghimire, Laura Langohr, Matias Falco, Anna Pirttikoski (University of Helsinki) More information: https://ssl.eventilla.com/single-cell_r_2022 2. Single-cell RNA-seq data analysis using Chipster 7.10.2022 (inc. spatial transcriptomics module on 25.10.2022) This online course introduces scRNA-seq data analysis methods. It covers the processing of transcript counts from quality control and filtering to dimensional reduction, clustering, cell type identification and differential expression analysis. You will also learn how to do integrated analysis of multiple samples. The optional spatial transcriptomics module covers the analysis of Visium data. In the exercises we use Seurat tools embedded in the user-friendly Chipster software, so no experience in R is required. Teachers: Maria Lehtivaara, Eija Korpelainen and Iida Hakulinen (CSC) More information: https://ssl.eventilla.com/single-cell_spatial_chipster Best regards, Eija Eija Korpelainen, Ph.D Product Manager, ELIXIR-FI Training Coordinator CSC - IT Centre for Science P.O.Box 405, 02101 Espoo, Finland Phone +358 50 381 9726 eija.korpelainen(a)csc.fi<mailto:eija.korpelainen@csc.fi>

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Out of the office
by Antti Viklund 02 Sep '22

02 Sep '22

Hi, I am out of the office today. Antti

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REMINDER: Open online lecture, QUPATH: OPEN-SOURCE SOFTWARE FOR BIOIMAGE ANALYSIS AND DIGITAL PATHOLOGY, August 25th at 1 PM
by Sanna Palosaari 24 Aug '22

24 Aug '22

August 25th 13:00 Finnish time Open online lecture: https://oulu.zoom.us/j/64556587648 QuPath: Open-source software for bioimage analysis and digital pathology Reader, Peter Bankhead Institute of Genetics and Cancer University of Edinburgh [cid:image001.jpg@01D8B79C.C9F24A70] Dr Peter Bankhead - Reader Realising the potential of image analysis and AI for biology and pathology is hard, and requires software. Firstly, we need open and adaptable software tools that help specialists in different areas work together to devise meaningful algorithms. We then need user-friendly and accessible software platforms to make these algorithms widely available, so that others can validate and apply them in practice. QuPath (http://qupath.github.io) is free and open-source software designed to help address these needs. Since its release in 2016, QuPath has been downloaded more than 240,000 times and applied in well over 1,000 published studies by groups throughout the world. A growing community of users and developers are now using the platform to create innovative ways of exploring complex biomedical images, with over 2,300 QuPath-related discussions on the Scientific Community Image Forum at https://image.sc. This talk will describe QuPath’s background and current status, what the future holds, and how the software can be useful for a wide range of different groups working with whole slide and microscopy images today. Bio Pete completed his PhD at Queen’s University Belfast, focussing on the analysis of retinal images and calcium signals in retinal arterioles. He then moved to Germany, becoming a postdoc in the Nikon Imaging Center at Heidelberg University where he spent much of his time helping microscope users interpret their imaging data using open-source software. During this time he wrote a bioimage analysis handbook for biologists. This has recently been rewritten and released as a new open, interactive, executable book at https://bioimagebook.github.io. Upon returning to Belfast as a postdoc at the end of 2012, Pete encountered digital pathology for the first time. After trying to apply existing open software tools to whole slide images with limited success, he wrote his own: QuPath. After a short time in industry, Peter is now Reader (Associate Professor) at the University of Edinburgh, where he is building a group dedicated to developing open AI and bioimage analysis methods for pathology and other imaging data. Welcome to join and please feel free to share with colleagues.

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Open online lecture, QUPATH: OPEN-SOURCE SOFTWARE FOR BIOIMAGE ANALYSIS AND DIGITAL PATHOLOGY, August 25th at 1 PM
by Sanna Palosaari 11 Aug '22

11 Aug '22

August 25th 13:00 Finnish time Open online lecture: https://oulu.zoom.us/j/64556587648 QuPath: Open-source software for bioimage analysis and digital pathology Reader, Peter Bankhead Institute of Genetics and Cancer University of Edinburgh [cid:image001.jpg@01D8AD68.22C06DB0] Dr Peter Bankhead - Reader Realising the potential of image analysis and AI for biology and pathology is hard, and requires software. Firstly, we need open and adaptable software tools that help specialists in different areas work together to devise meaningful algorithms. We then need user-friendly and accessible software platforms to make these algorithms widely available, so that others can validate and apply them in practice. QuPath (http://qupath.github.io) is free and open-source software designed to help address these needs. Since its release in 2016, QuPath has been downloaded more than 240,000 times and applied in well over 1,000 published studies by groups throughout the world. A growing community of users and developers are now using the platform to create innovative ways of exploring complex biomedical images, with over 2,300 QuPath-related discussions on the Scientific Community Image Forum at https://image.sc. This talk will describe QuPath’s background and current status, what the future holds, and how the software can be useful for a wide range of different groups working with whole slide and microscopy images today. Bio Pete completed his PhD at Queen’s University Belfast, focussing on the analysis of retinal images and calcium signals in retinal arterioles. He then moved to Germany, becoming a postdoc in the Nikon Imaging Center at Heidelberg University where he spent much of his time helping microscope users interpret their imaging data using open-source software. During this time he wrote a bioimage analysis handbook for biologists. This has recently been rewritten and released as a new open, interactive, executable book at https://bioimagebook.github.io. Upon returning to Belfast as a postdoc at the end of 2012, Pete encountered digital pathology for the first time. After trying to apply existing open software tools to whole slide images with limited success, he wrote his own: QuPath. After a short time in industry, Peter is now Reader (Associate Professor) at the University of Edinburgh, where he is building a group dedicated to developing open AI and bioimage analysis methods for pathology and other imaging data. Welcome to join and please feel free to share with colleagues.

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Letter to Ravindra Daddali
by Teija Luoto 11 Aug '22

11 Aug '22

Hello, Who send a letter to Ravindra ? It has been returned due to a wrong address. Please pick it up from my office 472B, 4th floor. Best regards, Teija Teija Luoto, Management assistant Biocenter Oulu, University of Oulu Tel. +358 2 9448 6103 Street address: Aapistie 5A, 90220 Oulu, Finland Mail address: P.O. Box 5000, FI-90014 University of Oulu, Finland URL: http://www.oulu.fi/biocenter www.oulu.fi<http://www.oulu.fi/yliopisto> [cid:image001.jpg@01D8AD8B.8EAD96B0] [cid:image002.jpg@01D8AD8B.8EAD96B0] Follow us on Facebook<https://www.facebook.com/unioulu/>, Instagram<https://www.instagram.com/unioulu/?hl=fi>, Linkedin<https://www.linkedin.com/school/university-of-oulu/> and Twitter<https://twitter.com/unioulu>. The content of this message is confidential. If you are not a recipient indicated or intended in this message or you think this message may have been addressed to you in error, please inform us by an email reply and then delete the message. In such case it is forbidden to copy, forward, or in any way reveal the contents of this message to anyone.

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Nanodrop out of use at Kieppi building 4th floor
by Kati Richter 02 Aug '22

02 Aug '22

Hello everyone, the computer for the Nanodrop in room 438A, 4th floor at the Kieppi building doesn't restart properly and therefor no connection to the Nanodrop is possible. Technical service is informed about this matter. Reminder: PLEASE do NOT switch off the computer after using the Nanodrop! Greetings, Kati

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BCO-NAS1 is full again. URGENT!
by Antti Viklund 28 Jul '22

28 Jul '22

Hi all, The NAS is completely full again and that will stop transfers from the instruments. Move your old files away immediately. BCO-NAS1 is not meant for permanent storage of the data! More information about disk resources: https://patio.oulu.fi/en/services-and-instructions/it-services/data-storage… BRs, Antti

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