Dear all,

For those interested in scRNA-Seq, CSC is organizing two data analysis courses (detailed information below).

BR, Katri

From: bioclients-request@postit.csc.fi <bioclients-request@postit.csc.fi> On Behalf Of Eija Korpelainen
Sent: Monday, September 5, 2022 8:51 AM
To: bioclients <bioclients@postit.csc.fi>
Subject: [BioClients] Bioinformatics courses at CSC

Dear all,

Please note that registration is now open for two single-cell RNA-seq data analysis courses described below (application deadline 8.9.2022). Both courses consist of lectures and exercises. The lectures are pre-recorded, and participants are requested to view the videos prior to the course.

You might also like to save the date for the upcoming "Microbiome analysis with R/Bioconductor" online course 28.11-2.12.2022.

1. Single-cell RNA-seq data analysis using R 6.10.2022

This course introduces scRNA-seq data analysis concepts and R packages. It covers the processing of transcript counts from quality control and filtering to dimensional reduction, clustering, cell type identification and differential expression analysis. You should have some experience in using R in order to participate in this course.
Teachers: Bishwa Ghimire, Laura Langohr, Matias Falco, Anna Pirttikoski (University of Helsinki)
More information: https://ssl.eventilla.com/single-cell_r_2022


2. Single-cell RNA-seq data analysis using Chipster 7.10.2022 (inc. spatial transcriptomics module on 25.10.2022)

This online course introduces scRNA-seq data analysis methods. It covers the processing of transcript counts from quality control and filtering to dimensional reduction, clustering, cell type identification and differential expression analysis. You will also learn how to do integrated analysis of multiple samples. The optional spatial transcriptomics module covers the analysis of Visium data. In the exercises we use Seurat tools embedded in the user-friendly Chipster software, so no experience in R is required.
Teachers: Maria Lehtivaara, Eija Korpelainen and Iida Hakulinen (CSC)
More information: https://ssl.eventilla.com/single-cell_spatial_chipster

Best regards,

Eija

Eija Korpelainen, Ph.D
Product Manager, ELIXIR-FI Training Coordinator
CSC - IT Centre for Science
P.O.Box 405, 02101 Espoo, Finland
Phone +358 50 381 9726
eija.korpelainen@csc.fi