Crc March 2009

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THE SPRING 2009 KIEPPI SEMINAR PROGRAM - THE FIRST SEMINAR NEXT WEEK 19.3. 12-13 HALL 116b
by Seppo Vainio 11 Aug '09

11 Aug '09

DEAR SCIENTISTS, It is my pleasure to send you the program for the KIEPPI spring 2009 seminar. We have the pleasure to be exposed to science done in BCO labs but also in the various other Departments of our faculty and the clinic. The first seminar will be next week and is given by PhD. Ilya Skovorodking. He will tell us about his tissue and organ engineeting projects. Many thanks for all the speakers that accepted the invitation to join the cross departmental/center seminar series, I hope you will enjoy the program, Looking forward seing you next week, Seppo Seppo Vainio, PhD, Prof. Group leader of Biocenter Oulu Lab of Dev. Biol., Dept. of Med. Biochem. & Mol. Biol., Univ. of Oulu Mailing address: P.O.Box 5000, FIN-90014, University of Oulu, Finland Street address: Aapistie 5A, Rm.412, 90220, Oulu, FINLAND Tel.: 358-8-537 6084 Fax.: 358-8-537 6115 email: seppo.vainio(a)oulu.fi Lab:http://www.biocenter.oulu.fi/projects/vainio.html Biocenter Oulu homepage: http://www.biocenter.oulu.fi/

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[Fwd: kutsu]
by Tiina Hurskainen 30 Mar '09

30 Mar '09

<<kutsu CRC.doc>> -------------------------------------------- Maija Moilanen Area Manager Laboratory Equipment Division Thermo Fisher Scientific tel. +358-40-520-7838 fax +358-9-329-10531 maija.moilanen(a)thermofisher.com _www.thermofisher.com_ <file://www.thermofisher.com>

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[Fwd: [Ltkhkunta] Oletko syöpätutkija Oulun lääketieteellisessä tkd:ssa?]
by Tiina Hurskainen 30 Mar '09

30 Mar '09

Hyvä Oulun lääketieteellisen tiedekunnan tutkija. Jos teet aktiivisesti syöpätutkimusta ja janoat interaktiota muiden saman alan tutkijoiden kanssa, olet etsimämme henkilö. Me allekirjoittaneet haluamme toimia Oulun lääketieteellisen tdk:n ensimmäisen syöpätutkijoiden tapaamisen koolle kutsujina. Vastaamalla myöntävästi kutsuumme, saat seuraavassa vaiheessa tiedon tarjolla olevista kokouspäivistä, joista valitaan suosituin. Tarkoituksemme on selvittää tiedekuntamme syöpätutkimuksen tila ja painoarvo sekä lisätä alan tutkijoiden verkostoitumista. Myöntävän vastauksen kutsuumme voit lähettää osoitteella Hilkka.Penttinen(a)oulu.fi <mailto:Hilkka.Penttinen@oulu.fi> maanantaihin 6.4. mennessä. Ystävällisin terveisin Ari ja Robert Ari Ristimäki, patologisen anatomian professori, syöpätutkija Robert Winqvist, syöpägenetiikan professori, syöpätutkija P.S. Voit vapaasti levittää tätä viestiä, jos tiedät jonkun tiedekuntamme syöpätutkijan jääneen tämän postituslistan ulkopuolelle. Pahoittelumme, jos saat tämän viestin useampaan kertaan. _______________________________________________ Ltkhkunta mailing list Ltkhkunta(a)lists.oulu.fi http://lists.oulu.fi/mailman/listinfo/ltkhkunta

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[Fwd: [Ltkhkunta] Ilmoitus virkistyspäivästä]
by Tiina Hurskainen 18 Mar '09

18 Mar '09

Hei, koska kaikki eivät ole saaneet tietoonsa ilmoitusta virkistyspäivistä, laitan ohessa liitteenä vielä varmuuden vuoksi tuon ilmoituksen hiihtopäivistä. T.Kati _______________________________________________ Ltkhkunta mailing list Ltkhkunta(a)lists.oulu.fi http://lists.oulu.fi/mailman/listinfo/ltkhkunta

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Tomorrow the first Spring 2009 KIEPPI seminar 12-13 Hall 116B
by Seppo Vainio 18 Mar '09

18 Mar '09

Dear Scientists in the KIEPPI research building, It is my pleasure to advertise the first spring 2009 kieppi seminar. The contributing research units are 1) Biocenter Oulu Kieppi Res. Blg., 2) Clinical Research Center and 3) Microbiology Dept. The seminar will take place in Hall 116B 12.00-13.00 The talk will be given by: Ilya Skovorodkin (BCO): Developing renal tissue engineering technologies Ilya will tell us about his aims to develop renal tissue engineering technologies. All of you are warmly wellcome to listen him ! Seppo Seppo Vainio, PhD, Prof. Group leader of Biocenter Oulu Lab of Dev. Biol., Dept. of Med. Biochem. & Mol. Biol., Univ. of Oulu Mailing address: P.O.Box 5000, FIN-90014, University of Oulu, Finland Street address: Aapistie 5A, Rm.412, 90220, Oulu, FINLAND Tel.: 358-8-537 6084 Fax.: 358-8-537 6115 email: seppo.vainio(a)oulu.fi Lab:http://www.biocenter.oulu.fi/projects/vainio.html Biocenter Oulu homepage: http://www.biocenter.oulu.fi/

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Viikkopalaveri!
by Tiina Hurskainen 18 Mar '09

18 Mar '09

Hei, Pidetään lyhyehkö viikkopalaveri pe 20.3.2009 klo 8.30 neuvotteluhuoneessa. t. Tiina

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[Fwd: Genomatix-kurssi Helsingin yliopistolla]
by Tiina Hurskainen 18 Mar '09

18 Mar '09

********************************* Next Generation Sequencing is growing ever more popular and successful. The challenge is how to make the most out of the data your sequencing platform throws at you. Genomatix has put substantial effort into the development of Next Generation Sequencing data analysis applications that help you there. Together with cooperation partners, we recently started a succession of workshops on this topic, which has met with considerable response. Continuing this series, we would like to invite you to our next NGS event: *A **Joint** **University** of **Helsinki**/Genomatix Workshop on Next Generation Sequencing Data Analysis* *on Tuesday, 14 April - **Thursday, 16 April 2009* *at the Biomedicum Helsinki.* The workshop will cover NGS data analysis strategies, both for mRNA-Seq data as well as for ChIP-Seq. *_Programme:_* *Tue 14/04 (from **9 am** to **5 pm**, with breaks):* A brief overview of 454 / Solexa / SOLiD systems Presentations by the course participants introducing their own projects *Wed 15/04 (from **9 am** to **4 pm**, with breaks):* Introduction to the Genomatix NGS analysis pipeline - demo and hands-on analysis examples for ChIP-Seq and RNA-Seq The examples are based on real world data. We will show the possibilities for extending genome annotation, splice variant detection and discovery of new transcriptional units. In addition the downstream biological mining of enriched regions from ChIP-Seq will be demonstrated. This will focus on transcription factor (TF) analysis in terms of TF overrepresentation in enriched regions and the discovery of functional motifs and patterns of TFs. New insights into biological mechanisms can be gained by overlaying data from different experiment types. Among others the following areas will be covered * high efficiency mapping of raw sequence tags * clustering of sequence tags (peak finding) * data integration into up to date genome annotation * down stream analysis of peak regions * calculation of expression values and profiles * global correlations of peak regions with genomic elements * transcription factor analysis and de-novo motif discovery *Thu 16/04 (from **9 am** to **4 pm**, with breaks):* Workshop with participants’ own NGS data As a special offer you can bring your own data which will be analyzed on the third day of the workshop. If you are interested in that, please refer to http://www.genomatix.de/seminars/NGSdataspecs.html for supported data formats, target species, and genome builds. Due to organizational limitations, we can accept a maximum of NGS data equivalent to two lanes in a flow cell, per participant. *_Registration:_* *For registration, please visit the **University** of **Helsinki** registration page: * https://elomake.helsinki.fi/lomakkeet/14826/lomake.html Registration deadline is March 31, 2009; the number of participants is limited to 20. Please note: Our intention is that you profit in your work from this event as much as possible. Therefore, should we receive more registrations than we have seats, privilege will be given to participants who can bring supported NGS data of their own to the workshop. We are looking forward to welcoming you and to a lively scientific exchange! Best regards Christian Zinser ----------------------------------------------------------- Dr. Christian Zinser Head of Training Genomatix Software GmbH Bayerstrasse 85a 80335 Munich Germany http://www.genomatix.de Phone +49-89-599 766 0 Fax +49-89-599 766 55 E-mail zinser(a)genomatix.de

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FW: Bioforum Oulu & GE Healthcare: Process Development & Protein Purification Day 16.3.2009, Medipolis, Oulu
by Mari Leppilampi 10 Mar '09

10 Mar '09

Process Development & Protein Purification Day Time Monday 16th of March, 2009 from 10.00 - 18.00 Venue Medipolis, Kiviharjuntie 11, Oulu, Finland Registration By Thursday 12th of March, 2009 at mari.leppilampi(a)ouluinnovation.com or by phone +358 44 2140120 Programme 10.00 Coffee 10.30 Welcome and introduction Tuula Palmén, Bioforum Oulu, Oulu Innovation 10.45 GE Healthcare, introduction and capabilities Vibeke Holmer, GE Healthcare 11.30 Introduction to protein purification Sofie Stille, GE Healthcare - The general process facility - Overview of the different unit operations 12.00 Lunch 13.00 Process development Chromatography media for research and drug screening (30 min) Criteria for screening, process development and regulatory aspects (30 min) Annika Karlsson, GE Healthcare 14.00 Process development and pilot scale manufacturing hardware systems overview Laboratory scale and process development hardware systems (20 min) Jussi Junkkarinen, GE Healthcare Pilot scale manufacturing hardware systems (20 min) Sofie Still, GE Healthcare The ReadyToProcess concept (20 min) Annika Karlsson, GE Healthcare 15.00 Coffee break and time for questions 15.30 The industrial perspective Process economy (20 min) MAB framework, an industrial approach to Monoclonal Antibody Purification (20 min) Annika Karlsson, GE Healthcare Process scale hardware systems (20 min) Sofie Stille, GE Healthcare 16.30 Process purification training Introduction to FastTrak concept and courses Annika Karlsson, GE Healthcare 17.00 The AxiChrom chromatography column Concept and features (20 min) Sofie Stille, GE Healthcare Industrial example (20 min) Guest speaker 17.45 Summary and closing Tuula Palmén, Bioforum Oulu, Oulu Innovation 18.00 Meeting ends The seminar day is free of charge. Welcome! More information: 050-4617290 / Tuula Palmén or 044-2140120 / Mari Leppilampi Kind regards, Tuula Palmén Bioforum Oulu Oulu Innovation in collaboration with the GE Healthcare team: Vibeke Holmer, Nordic Sales Manager Annika Karlsson, Sales Development Manager Sofie Stille, Account Manager, BioProcess Jussi Junkkarinen, Account Manager, Research Science

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Crc March 2009