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FW: Finnish Biobanks Aiding Fundamental Biomedical & Clinical Research, Nov 19-20, University of Oulu
by Antti Haapalainen 05 Nov '18

05 Nov '18

From: owner-finbionet-members(a)helsinki.fi <owner-finbionet-members(a)helsinki.fi> On Behalf Of Tienhaara, Anita M H Sent: 5. marraskuuta 2018 7:43 To: finbionet-members(a)helsinki.fi Subject: Finnish Biobanks Aiding Fundamental Biomedical & Clinical Research, Nov 19-20, University of Oulu Finnish Biobanks Aiding Fundamental Biomedical & Clinical Research<http://www.oulu.fi/sites/default/files/content/Program%20of%20the%20BB-cour…> Organizer: Health and Biosciences Doctoral Programme, University of Oulu Biocenter Oulu and Borealis Biobank of Northern Finland (BB) & FinBB Time: 19-20.11.2018, Oulu University Medical School, Aapistie 5 Lecture hall: F101 (19.11.) and F202 (20.11.) Credits: 0.5 study points Registration until Nov 13 here >><https://www.webropolsurveys.com/S/B2C79579D44C49B4.par> Link to programme in PDF-format >><http://www.oulu.fi/sites/default/files/content/Program%20of%20the%20BB-cour…> Monday 19.11.2018 09.00-09.10 Welcome and opening words by Seppo Vainio 09.10.09.20 University of Oulu greetings by Vice Rector Taina Pihlajaniemi Session I. Value of the biobanks in medicine - Chair: Seppo Vainio 09.20-09.45 Marco Hautalahti: The Finnish biobank cluster FinBB and the European BBMRI 09.45-10.10 Anu Jalanko: National biobank effort - Finngen 10.10-10.40 Joakim Dillner: National and international collaboration via the biobanks 10.40-11.10 Sirpa Soini: The law and order in the biobank activities 10.10-11.30 Minna Mäkiniemi: Biobanks, the university hospitals and the ethical aspects 11.30-12.30 Lunch break & interactions: Session II: Biobanks and Finnish neuro-, cancer and genome centers - Chair: Pia Nyberg 12.30-12.50 Ville Leinonen: Prospects in Neuroscience 12.50-13.10 Arto Mannermaa: The emerging Genome center 13.10-13.30 Jussi Koivunen: FICAN - the Finnish Cancer Center 13.30-13.50 Coffee, tea and interactions Session III: Cohorts and biobanks - Chair: Heljä-Marja Surcel 13.50-14.00 Sylvain Sebert: Introduction to cohort studies * 14.00-14.45 Vincent Jaddoe: The European birth cohort network * 14.45-15.05 Tiina Wahlfors: Finnish Red Cross biobanks 15.05-15.30 Riitta Veijola: National cohorts to study diabetes 15.30-15.55 Minna Ruddock: Northern Finland Birth cohorts 15.55-16.15 Heljä-Marja Surcel: Finnish Maternity Cohort (FMC) and Finnish registries 16.15-16.40 Johanna Uusimaa: Clinical research resources at the MRC Oulu: patient cohorts, samples and infrastructure * (Joint programme with the course: Study design, Data processing and Epidemiology<http://www.oulu.fi/sites/default/files/content/HBS-DP%20Life-course%20Epide…>) Summary of the biobank day and closing Seppo Vainio Dinner for the speakers 19- Tuesday 20.11.2018 08.30-09.00 Coffee, tea and interactions Session IV: Biobanks in practice - Chair: Tiina Pekkala 09.00-09.20 Juha Näpänkangas: Digital pathology and the biobanks 09.20-09.40 Pia Nyberg: Borealis in the arena of the Finnish biobanks 09.40-10.00 Eila Suvanto: Case studies with the biobanks samples 10.00-10.20 Lila Kallio: Auria Biobank - from discovery to feasibility studies 10.20-10.40 Johannes Kettunen: The genetics and the genome level BIG data in FinnGen 10.40-11.00 Antti Karlsson: Big (?) data analysis in healthcare 11.00-12.00 Lunch break and interactions Session V: Biobanks and the health care digital era - Chair: Juha Röning 12.00-12.20 Marko Pylkkänen: The digital world of the Oulu University Hospital 12.20-12.50 Tarja Laitinen: The biobank related data hubs and the data lakes 12.50-13.20 Juha Röning: Can we be safe in the digital worlds - the ethics of the digits ? 13.20-13.45 Jussi Hiltunen: Visions for mass produced bioelectronics and biosensors 13.45-14.10 Tapio Seppänen: Digital medicine on site, in the body and in remote Summary of the biobank days and closing Seppo Vainio

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Reminder, Today: Seminar - Dr. Sakari Vanharanta - Transcriptional control of cancer progression
by Mirja Peltola 02 Nov '18

02 Nov '18

Reminder Today Good morning everyone, Welcome to the Health and Biosciences Guest Seminar Time: Today, Nov 2, 12:00 - 13:00 Coffee is served before the seminar from 12:00/12:15. Place: Leena Palotie Auditorium, Kontinkangas campus Speaker: Dr. Sakari Vanharanta, University of Cambridge, UK Title of the talk: "Transcriptional control of cancer progression" About the speaker: Dr. Sakari Vanharanta studied medicine at the University of Helsinki and completed his PhD work on human tumour genetics. He has worked on the molecular mechanisms of metastatic cancer progression at the laboratory of Joan Massagué at the Memorial Sloan-Kettering Cancer Center, New York. In 2014 Vanharanta joined the MRC Cancer Unit, UK (UK Medical Research Council, School of Clinical Medicine of the University of Cambridge). Vanharanta's research focuses on transcriptional determinants of cancer progression: exploring the molecular mechanisms that modulate the phenotypic output of tumour-initiating transcriptional pathways in support of cancer progression and metastasis. Understanding the origins and nature of metastatic cancer will provide insights into the fundamental requirements of cancer cell states and help identify functionally relevant biomarkers as well as therapeutic targets. You can see more details about Dr. Sakari Vanharanta's research and publications at https://www.mrc-cu.cam.ac.uk/research/sakari-vanharanta-folder Welcome! Feel free to distribute this announcement further to other interested groups or individuals! Best wishes, Mirja ------------------------------------------------------------ Mirja Peltola, PhD Coordinator Health and Biosciences Doctoral Programme<http://www.oulu.fi/uniogs/dp/hbsdp> P.O.Box 5000, FIN-90014 University of Oulu, Finland (Aapistie 5A, Room 473B) Tel: (+358) 0294 485447 Email: mirja.peltola @ oulu.fi<mailto:mirja.peltola@oulu.fi> -----------------------------------------------------------

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RE: Terveystalon työpaikkaselvityksen palautetilaisuus / Feedback of workplace survey by Terveystalo
by Antti Haapalainen 01 Nov '18

01 Nov '18

From: crc-bounces(a)lists.oulu.fi <crc-bounces(a)lists.oulu.fi> On Behalf Of Antti Haapalainen Sent: 22. lokakuuta 2018 9:13 To: crc(a)lists.oulu.fi Subject: [Crc] Terveystalon työpaikkaselvityksen palautetilaisuus Hei, Terveystalon suorittaman työpaikkaselvityksen palautetilaisuus on torstaina 1.11. klo 13-14:30 salissa F202. Toivottavasti moni meistä pääsee paikan päälle, myös ne, jotka eivät ole tällä hetkellä työsuhteessa yliopistoon. Kyse on yhteisistä työskentelytiloista ja -tavoista, jolloin kaikkien olisi hyvä tietää, että missä olemme hyviä, mihin asioihin pitäisi enemmän kiinnittää huomiota ja mitä parannuksia pitäisi tehdä. Tilaisuus on sekä suomeksi että englanniksi. Hi, The feedback session of Terveystalo's workplace survey will be on Thursday 1.11. at 13-14: 30 in room F202. Hopefully, many of us will be able to join the session, including those who are not currently in employment at the university. It is about common working spaces and ways, and everyone should know where we are good at, what matters should more attention be paid to and what improvements should be made. The event is both in Finnish and in English. Terv. Antti Haapalainen

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Course: Mouse as a model in neuroscience research – basic concepts and disease modelling, Nov 28-29
by Mirja Peltola 31 Oct '18

31 Oct '18

Please note the upcoming Health and Biosciences Doctoral Programme course: Mouse as a model in neuroscience research – basic concepts and disease modelling<http://www.oulu.fi/sites/default/files/content/Neurohiiri_mainos_A4_V2.pdf> Time and place: November 28th and 29th 2018 at Kontinkangas Campus. Course overview: The course offers basic knowledge on brain anatomy and development, and gives an update of latest research findings and methods in the field. The translational aspects from mouse model-derived data to human disease are also considered. The course is aimed for students and researchers in medicine, biochemistry and molecular medicine, biology and other relevant fields. The lectures are open for all interested. Study credits: Participation in lectures 0.5 ECT and additional 0.5 ECT for poster. Registration: https://www.webropolsurveys.com/S/D946C30E9BF4525B.par Coffee and snacks are served for registered participants. Registration open until 16.11.2018. Topics, speakers and detailed schedule can be found from this link >><http://www.oulu.fi/sites/default/files/content/Neurohiiri_mainos_A4_V2.pdf> More information: salla.kangas(a)oulu.fi<mailto:salla.kangas@oulu.fi>, anniina.hiltunen(a)oulu.fi<mailto:anniina.hiltunen@oulu.fi> Best wishes, Mirja ------------------------------------------------------------ Mirja Peltola, PhD Coordinator Health and Biosciences Doctoral Programme<http://www.oulu.fi/uniogs/dp/hbsdp> P.O.Box 5000, FIN-90014 University of Oulu, Finland (Aapistie 5A, Room 473B) Tel: (+358) 0294 485447 Email: mirja.peltola @ oulu.fi<mailto:mirja.peltola@oulu.fi> -----------------------------------------------------------

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Reminder: Health and Biosciences Doctoral training course - Study design, Data processing and Epidemiology
by Mirja Peltola 31 Oct '18

31 Oct '18

Reminder Study design, Data processing and Epidemiology<http://www.oulu.fi/sites/default/files/content/HBS-DP%20Life-course%20Epide…> The training will intend to bring knowledge and awareness on the following : * Study design and data collection - how to reduce bias?; * Sources of data - how to access the data relevant to your question? * Pre-processing and good practices in data management; * Estimating and improving your statistical power and precision; * Dissecting your associations for interpretation * Course will consist of series of lectures by international researchers in the field of Epidemiology, Population Science, Public Health and Biostatistics validated by a practical session to help designing your research based on multiple epidemiological resources available at the University of Oulu but also from the Open access space. Date: 19th, 23rd, 26-29th of November 2018 Course announcement including the updated, tentative programme in PDF-format can be downloaded from here >><http://www.oulu.fi/sites/default/files/content/HBS-DP%20Life-course%20Epide…> To register please follow the link: https://doodle.com/poll/k6e9mxfb9ex8eivx Contact Person: Sylvain Sebert Center For Life-Course Health Research - Faculty of Medicine sylvain.sebert(a)oulu.fi<mailto:sylvain.sebert@oulu.fi> +358 503 44 08 42 http://www.oulu.fi/university/researcher/sylvain-sebert http://www.oulu.fi/medicine/elite Best wishes, Mirja ------------------------------------------------------------ Mirja Peltola, PhD Coordinator Health and Biosciences Doctoral Programme<http://www.oulu.fi/uniogs/dp/hbsdp> P.O.Box 5000, FIN-90014 University of Oulu, Finland (Aapistie 5A, Room 473B) Tel: (+358) 0294 485447 Email: mirja.peltola @ oulu.fi<mailto:mirja.peltola@oulu.fi> -----------------------------------------------------------

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Course: Nov 19-20, Finnish Biobanks Aiding Fundamental Biomedical & Clinical Research
by Mirja Peltola 31 Oct '18

31 Oct '18

Training announcement Finnish Biobanks Aiding Fundamental Biomedical & Clinical Research<http://www.oulu.fi/sites/default/files/content/Program%20of%20the%20BB-cour…> Organizer: Health and Biosciences Doctoral Programme, University of Oulu Biocenter Oulu and Borealis Biobank of Northern Finland (BB) & FinBB Time: 19-20.11.2018, Oulu University Medical School, Aapistie 5 Lecture hall: F101 (19.11.) and F202 (20.11.) Credits: 0.5 study points Registration until Nov 13 here >><https://www.webropolsurveys.com/S/B2C79579D44C49B4.par> Link to programme in PDF-format >><http://www.oulu.fi/sites/default/files/content/Program%20of%20the%20BB-cour…> Monday 19.11.2018 09.00-09.10 Welcome and opening words by Seppo Vainio 09.10.09.20 University of Oulu greetings by Vice Rector Taina Pihlajaniemi Session I. Value of the biobanks in medicine - Chair: Seppo Vainio 09.20-09.45 Marco Hautalahti: The Finnish biobank cluster FinBB and the European BBMRI 09.45-10.10 Anu Jalanko: National biobank effort - Finngen 10.10-10.40 Joakim Dillner: National and international collaboration via the biobanks 10.40-11.10 Sirpa Soini: The law and order in the biobank activities 10.10-11.30 Minna Mäkiniemi: Biobanks, the university hospitals and the ethical aspects 11.30-12.30 Lunch break & interactions: Session II: Biobanks and Finnish neuro-, cancer and genome centers - Chair: Pia Nyberg 12.30-12.50 Ville Leinonen: Prospects in Neuroscience 12.50-13.10 Arto Mannermaa: The emerging Genome center 13.10-13.30 Jussi Koivunen: FICAN - the Finnish Cancer Center 13.30-13.50 Coffee, tea and interactions Session III: Cohorts and biobanks - Chair: Heljä-Marja Surcel 13.50-14.00 Sylvain Sebert: Introduction to cohort studies * 14.00-14.45 Vincent Jaddoe: The European birth cohort network * 14.45-15.05 Tiina Wahlfors: Finnish Red Cross biobanks 15.05-15.30 Riitta Veijola: National cohorts to study diabetes 15.30-15.55 Minna Ruddock: Northern Finland Birth cohorts 15.55-16.15 Heljä-Marja Surcel: Finnish Maternity Cohort (FMC) and Finnish registries 16.15-16.40 Johanna Uusimaa: Clinical research resources at the MRC Oulu: patient cohorts, samples and infrastructure * (Joint programme with the course: Study design, Data processing and Epidemiology<http://www.oulu.fi/sites/default/files/content/HBS-DP%20Life-course%20Epide…>) Summary of the biobank day and closing Seppo Vainio Dinner for the speakers 19- Tuesday 20.11.2018 08.30-09.00 Coffee, tea and interactions Session IV: Biobanks in practice - Chair: Tiina Pekkala 09.00-09.20 Juha Näpänkangas: Digital pathology and the biobanks 09.20-09.40 Pia Nyberg: Borealis in the arena of the Finnish biobanks 09.40-10.00 Eila Suvanto: Case studies with the biobanks samples 10.00-10.20 Lila Kallio: Auria Biobank - from discovery to feasibility studies 10.20-10.40 Johannes Kettunen: The genetics and the genome level BIG data in FinnGen 10.40-11.00 Antti Karlsson: Big (?) data analysis in healthcare 11.00-12.00 Lunch break and interactions Session V: Biobanks and the health care digital era - Chair: Juha Röning 12.00-12.20 Marko Pylkkänen: The digital world of the Oulu University Hospital 12.20-12.50 Tarja Laitinen: The biobank related data hubs and the data lakes 12.50-13.20 Juha Röning: Can we be safe in the digital worlds - the ethics of the digits ? 13.20-13.45 Jussi Hiltunen: Visions for mass produced bioelectronics and biosensors 13.45-14.10 Tapio Seppänen: Digital medicine on site, in the body and in remote Summary of the biobank days and closing Seppo Vainio Best wishes, Mirja ------------------------------------------------------------ Mirja Peltola, PhD Coordinator Health and Biosciences Doctoral Programme<http://www.oulu.fi/uniogs/dp/hbsdp> P.O.Box 5000, FIN-90014 University of Oulu, Finland (Aapistie 5A, Room 473B) Tel: (+358) 0294 485447 Email: mirja.peltola @ oulu.fi<mailto:mirja.peltola@oulu.fi> -----------------------------------------------------------

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Koulutus: Opi hyödyntämään patenttitietokantoja! 29.11.
by Maarit Jokela 31 Oct '18

31 Oct '18

Obs! This course from patent databases is in Finnish but the similar course will be arranged in English next spring (3rd May)! Patentit sisältävät suuren määrän tietoa, jota ei läheskään aina löydy tieteellisistä julkaisuista. Kun suunnittelet uutta tutkimusprojektia, selvitä artikkelien lisäksi mitä patenteista löytyy. Tee vaikutus rahoittajaan osoittamalla, että myös patenttien sisältämä tieto on hallussasi hakiessasi tutkimusrahoitusta. Näin voit osoittaa, että olet tutkimassa jotain uutta. Tule kurssille ja opi hyödyntämään patenttitietokantoja. Saat myös vinkkejä siitä, miten niitä kannattaa lukea. Kurssilla opitaan näitä asioita tekemisen kautta. Milloin: 29.11.2018 klo 9.15-16 Missä: TA102 (Linnanmaa campus) Kenelle: jatko-opiskelijoille, väitelleille tutkijoille, senioritutkijoille ja kaikille aiheesta kiinnostuneille Ilmoittautuminen: Weboodiin (kurssikoodi 920013J) tai sähköpostilla (maarit.jokela(a)oulu.fi<mailto:maarit.jokela@oulu.fi>) 23.11. mennessä Kurssiohjelma<https://notio.oulu.fi/fi/ajankohtaista/_layouts/15/WopiFrame.aspx?sourcedoc…> Lisätietoja: Maarit.Jokela(a)oulu.fi<mailto:Maarit.Jokela@oulu.fi>, puh. 040 355 9660 t. Maarit _____________________________________________________ Maarit Jokela, PhD (Biochem.) Innovation Manager [oulun+yliopisto_logo_eng_black_rgb_1 cm] University of Oulu Innovation Services P.O.Box 4300 (street address: Erkki Koiso-Kanttilan katu 1) FI-90014 University of Oulu FINLAND tel. +358-40-355 9660 Internal mail: Maarit Jokela / Innovaatiopalvelut Room: M207 / Linnanmaa campus https://fi.linkedin.com/in/maaritjokela http://www.oulu.fi/yliopisto/keksinnot http://www.oulu.fi/university/inventions ________________________________________________

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DWA-välinehuolto: Flunssa iski välinehuoltoon - Flu in the DWA unit
by Virpi Glumoff 31 Oct '18

31 Oct '18

Hei Kampuksen välinehuollossa on työtekijävajausta flussan takia tällä viikolla. Tiskit tiskataan loppuviikon ajan biokemian pään yksikössä. Autoklaavaus toimii Kiepissä normaalisti. Kiireellisissä tapauksissa olkaa yhteydessä allekirjoittaneeseen. tv. Virpi Dear All There is lack of personnel in the DWA unit on this week. Dishes are handled only in the Biochemistry unit. Autoclavings are run normally in Kieppi. In acute cases be in contact with Virpi BR virpi

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Linux training in CSC
by Anu Pasanen 30 Oct '18

30 Oct '18

Hi, there is still room in Linux 2 - intermediate Linux -course organized by CSC in Espoo. Registration closes tomorrow. https://www.csc.fi/fi/web/training/-/linux-2-november-2018 BW, Anu

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Biolog-seminar invitation 21.11.2018
by Tuire Salonurmi 30 Oct '18

30 Oct '18

Dear scientists and other people interested about new technologies in the field of biomedical sciences: I have promised to send this info package and an invitation to the seminar on behalf of Timo Tumelius/Labema Oy. The seminar will take place here at the Kontinkangas campus 21st November, 12.00. As attached you can find some information about the BIOLOG as a tool for metabolic profiling. Please feel free to forward this message to those who might be interested but are not on these mailing lists. Kind regards Tuire Salonurmi, PhD, Docent Faculty of Medicine, Internal Medicine Univ. of Oulu [cid:image004.png@01D4704F.CEE7EBE0] From: Timo Tumelius <timo.tumelius(a)labema.fi> To: Tuire Salonurmi <Tuire.Salonurmi(a)oulu.fi> Subject: 21.11.2018 Biolog-seminaarin kutsu & abstrakti Ohessa kutsu ja hieman muuta materiaalia jakoon sopimaamme Biologin metaboliatutkimustyökalujen seminaariin siellä Oulussa ke 21.11. klo 12.00. Terveisin, Timo Tumelius --- [cid:277BF855-F741-4D4E-8748-9EE0A832F7E8@cable.inet.fi] Labema Oy | Timo Tumelius, M.Sc. | Scientific Liaison Manager Elimäenkatu 9 B, 00510 HELSINKI timo.tumelius(a)labema.fi<mailto:timo.tumelius@labema.fi> | labema(a)labema.fi<mailto:labema@labema.fi> | www.labema.fi<http://www.labema.fi> Tel +358 (0)9 274 67 425 | Customer service +358 (0)9 274 6740

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