Subject: [Ltkhkunta] Reminder! CSC workshop in Oulu: Expression data analysis with Chipster
Reminder of the CSC workshop: Expression data analysis with Chipster. Registration by Wednesday the
29th of April.
Expression data analysis with Chipster
Time 6th -7th of May 2015
Place Computer classroom KT285
University of Oulu, Kontinkangas Campus, Aapistie 5B
Credits 0.5 ECTS for field-specific doctoral studies
This hands-on course covers the analysis of RNA-seq data and microarray data.
The free and user-friendly Chipster software is used in the exercises, so no previous knowledge of Unix or R is required, and the course is thus suitable for everybody.
Trainers: Eija Korpelainen and Maria Lehtivaara, CSC.
6.5.2015 RNA-seq data analysis 9:30 AM to 17 PM
This hands-on tutorial covers the main steps in RNA-seq data analysis, including quality control (FastQC and PRINSEQ), alignment (TopHat) and quantification (HTSeq) as well as differential expression analysis (edgeR and DESeq) and genome
browser visualization.
7.5.2015 Microarray data analysis 9 AM to 14 PM
This hands-on tutorial covers the analysis of Affymetrix data from quality control and normalization to statistical testing, annotation and pathway analysis.
Registration Registration is obligatory. Max. 30 participants are accepted. Registration by 29th of April, 2015. Link to registration:
https://www.webropolsurveys.com/S/DFA26754F58B83C6.par
Information: Sini Skarp, email:
sini.skarp@oulu.fi
Organisers: Biocenter Oulu Doctoral Programme and Biocenter Oulu, Sequencing and expression analysis center, Microarray Core Facility, University of Oulu, Aapistie 5A, P.O.Box 5000, FIN-90014
Oulu, Finland