Reminder: Course: Nov 19-20, Finnish Biobanks Aiding Fundamental Biomedical & Clinical Research
Deal all, Please note that the registration time for the biobank course is soon closing. Some minor updates to the program have been made: http://www.oulu.fi/sites/default/files/content/Program%20of%20the%20BB-cours...
best regards, Pia
Pia Nyberg Project Manager, PhD, Adjunct Professor/Docent Northern Finland Biobank Borealis
Oulu University Hospital Medical Research Center MRC PO Box 10, 90029 OYS
Tel: +358-400-461 349 Email: pia.nyberg@ppshp.fimailto:pia.nyberg@ppshp.fi or pia.nyberg@oulu.fimailto:pia.nyberg@oulu.fi Learn more: https://www.ppshp.fi/Tutkimus-ja-opetus/Biopankki/Pages/Biobank-Borealis-bri...
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From: Mirja Peltola Sent: 31. lokakuuta 2018 18:57 To: LTK ltk-staff@oulu.fi; fbmm@lists.oulu.fi; hbsdp@lists.oulu.fi; bco@lists.oulu.fi; 'mrcouluohjaajat@lists.oulu.fi' mrcouluohjaajat@lists.oulu.fi; bioposti@lists.oulu.fi; crc@lists.oulu.fi Subject: Course: Nov 19-20, Finnish Biobanks Aiding Fundamental Biomedical & Clinical Research
Training announcement
Finnish Biobanks Aiding Fundamental Biomedical & Clinical Researchhttp://www.oulu.fi/sites/default/files/content/Program%20of%20the%20BB-course%2019-20_11_2018%20version%2026_10_2018_0.pdf
Organizer: Health and Biosciences Doctoral Programme, University of Oulu Biocenter Oulu and Borealis Biobank of Northern Finland (BB) & FinBB
Time: 19-20.11.2018, Oulu University Medical School, Aapistie 5 Lecture hall: F101 (19.11.) and F202 (20.11.) Credits: 0.5 study points Registration until Nov 13 here >>https://www.webropolsurveys.com/S/B2C79579D44C49B4.par
Link to programme in PDF-format >>http://www.oulu.fi/sites/default/files/content/Program%20of%20the%20BB-course%2019-20_11_2018%20version%2026_10_2018_0.pdf
Monday 19.11.2018
09.00-09.10 Welcome and opening words by Seppo Vainio 09.10.09.20 University of Oulu greetings by Vice Rector Taina Pihlajaniemi
Session I. Value of the biobanks in medicine - Chair: Seppo Vainio 09.20-09.45 Marco Hautalahti: The Finnish biobank cluster FinBB and the European BBMRI 09.45-10.10 Anu Jalanko: National biobank effort - Finngen 10.10-10.40 Joakim Dillner: National and international collaboration via the biobanks 10.40-11.10 Sirpa Soini: The law and order in the biobank activities 10.10-11.30 Minna Mäkiniemi: Biobanks, the university hospitals and the ethical aspects
11.30-12.30 Lunch break & interactions:
Session II: Biobanks and Finnish neuro-, cancer and genome centers - Chair: Pia Nyberg 12.30-12.50 Ville Leinonen: Prospects in Neuroscience 12.50-13.10 Arto Mannermaa: The emerging Genome center 13.10-13.30 Jussi Koivunen: FICAN - the Finnish Cancer Center
13.30-13.50 Coffee, tea and interactions
Session III: Cohorts and biobanks - Chair: Heljä-Marja Surcel 13.50-14.00 Sylvain Sebert: Introduction to cohort studies * 14.00-14.45 Vincent Jaddoe: The European birth cohort network * 14.45-15.05 Tiina Wahlfors: Finnish Red Cross biobanks 15.05-15.30 Riitta Veijola: National cohorts to study diabetes 15.30-15.55 Minna Ruddock: Northern Finland Birth cohorts 15.55-16.15 Heljä-Marja Surcel: Finnish Maternity Cohort (FMC) and Finnish registries 16.15-16.40 Johanna Uusimaa: Clinical research resources at the MRC Oulu: patient cohorts, samples and infrastructure * (Joint programme with the course: Study design, Data processing and Epidemiologyhttp://www.oulu.fi/sites/default/files/content/HBS-DP%20Life-course%20Epidemiology%20_2.pdf)
Summary of the biobank day and closing Seppo Vainio
Dinner for the speakers 19-
Tuesday 20.11.2018
08.30-09.00 Coffee, tea and interactions
Session IV: Biobanks in practice - Chair: Tiina Pekkala 09.00-09.20 Juha Näpänkangas: Digital pathology and the biobanks 09.20-09.40 Pia Nyberg: Borealis in the arena of the Finnish biobanks 09.40-10.00 Eila Suvanto: Case studies with the biobanks samples 10.00-10.20 Lila Kallio: Auria Biobank - from discovery to feasibility studies 10.20-10.40 Johannes Kettunen: The genetics and the genome level BIG data in FinnGen 10.40-11.00 Antti Karlsson: Big (?) data analysis in healthcare
11.00-12.00 Lunch break and interactions
Session V: Biobanks and the health care digital era - Chair: Juha Röning 12.00-12.20 Marko Pylkkänen: The digital world of the Oulu University Hospital 12.20-12.50 Tarja Laitinen: The biobank related data hubs and the data lakes 12.50-13.20 Juha Röning: Can we be safe in the digital worlds - the ethics of the digits ? 13.20-13.45 Jussi Hiltunen: Visions for mass produced bioelectronics and biosensors 13.45-14.10 Tapio Seppänen: Digital medicine on site, in the body and in remote
Summary of the biobank days and closing Seppo Vainio
Best wishes, Mirja
------------------------------------------------------------ Mirja Peltola, PhD Coordinator Health and Biosciences Doctoral Programmehttp://www.oulu.fi/uniogs/dp/hbsdp
P.O.Box 5000, FIN-90014 University of Oulu, Finland (Aapistie 5A, Room 473B)
Tel: (+358) 0294 485447 Email: mirja.peltola @ oulu.fimailto:mirja.peltola@oulu.fi -----------------------------------------------------------
Dear doctoral trainees in Health and Bioscience.
You will find below (and attached) the program of courses and seminars for the Training in Study design, Data processing and Epidemiology.
The lectures are open to all including more senior researchers.
With best regards Sylvain
Course program
Monday 19.11.18 – Joint program with the Biobank course
ROOM NUMBERS
Theme 1 - Longitudinal birth cohort studies in Europe – tools for open sciences - Session I
Time
Title
Who
Room number
14:00
The European Birth Cohort Network
Vincent Jaddoe
F202
Friday 23.11.18
Theme 1 - Longitudinal birth cohort studies in Europe – tools for open sciences - Session II
Time
Title
Who
Room number
10:00 - 10:45
Welcome and introduction
Sylvain Sebert
P117
11:00 – 11:45
Study designs in Epidemiology - Why does it matter?
Marjo-Riitta Järvelin
P117
Theme 1 - Longitudinal birth cohort studies in Europe – tools for open sciences - Session III
Time
Title
Who
Room number
13:00 - 13:45
The FinnGedi project
Eero Kajantie
P117
14:00 - 14: 45
The Generation NFBC studies a tool-box to study the molecular and environment determinants of life-long health
Marjo-Riitta Järvelin and Sylvain Sebert
P117
Monday 26.11.18
Theme 1 - Longitudinal birth cohort studies in Europe – tools for open sciences - Session IV
Time
Title
Who
Room number
11:00 - 11:45
Finnish health data - opportunity and challenges
Johannes Kettunen
F101
13:00 - 13:45
The ALSPAC study
Nicholas Timpson
F101
Theme 2 - Planning, managing, optimising, combining your data - Session I
Time
Title
Who
Room number
14:00 - 14:45
From confounding to causality basic principle and assumption
Nicholas Timpson
F101
Tuesday 27.11.18
Theme 2 - Planning, managing, optimising, combining your data - Session II
Time
Title
Who
Room number
10:00 - 10:45
Introduction to causation and causal models
Sylvain Sebert
101A
11:00 - 11:45
Power and Attrition analysis
Marianne Haapea
101A
13:00 - 13:45
Building your structural equation models – The do(s) and don’t(s)
Mimmi Tolvanen
101A
Time
Title
Who
Room number
14:00 - 14:45
Meta-analysis
Jouko Miettunen
F202
Theme 3 - Practical - Session I
Time
Title
Who
Room number
15:00 - 15:45
Tutorial and recommendation
Sylvain Sebert,
Jouko Miettunen,
Nina Rautio,
Mimmi Tolvanen
F202
Thursday and Friday 29.11.18 – 30.11.18
The practical will consist of a 10 + 10 min presentation of one of your research project, targeted to a scientific audience with a broad range of expertise including:
• The aim and hypothesis of your research; • The source of data; • Data management according to the FAIR principle; • A flowchart of the study identifying the design of your study and the source of attrition; • A graphical representation of the associations to be tested; • The model(s) to be tested; • The strengths of your approach; • The opportunities to complement your prospect.
Theme 3 – Practical – Session II
Time
Title
Who
Room number
9:00
Student 1
F101
9:20
Student 2
9:40
Student 3
10:00
Student 4
10:20
Student 5
10:40
Student 6
Break
11:20
Student 7
11:40
Student 8
Lunch break
13:00
Student 9
13:20
Student 10
13:40
Student 11
14:00
Student 12
Friday 30.11.18
9:00
Student 13
Place: P117
9:20
Student 14
9:40
Student 15
10:00
Student 16
10:20
Student 17
10:40
Student 18
Break
11:20
Student 19
11:40
Student 20
Lunch break
13:00
Student 21
13:20
Student 22
13:40
Student 23
14:00
Student 24
-
Pia Nyberg -
Sylvain Sebert