Genetics April 2005

genetics@lists.oulu.fi

4 participants
5 discussions

baps
by Pekka Pamilo 18 Apr '05

18 Apr '05

Jukka Corander's schedule turned out to be too busy and he cannot have the BAPS course in May. He considers a possibility to have it in the autumn. Jukka has a short presentation of BAPS at the Hailuoto meting this week. Pekka

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Mol. Ecol.
by Tommi Nyman 18 Apr '05

18 Apr '05

Hello, This is for those of you who (like me) had problems with accessing Mol. Ecol. on the library's Elaine page (I finally caught the person in charge of the e-journals): The Mol. Ecol. links on Elaine are wrong, but ME can be accessed via the new Nelli portal (via the library's main page), and then by using the "find e-journal" link. It is quite possible that there are easier ways of doing this? Cheers, Tommi N.

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[BioClients] Bioinformatics-related courses at CSC this spring (fwd)
by Minna Ruokonen 12 Apr '05

12 Apr '05

---------- Forwarded message ---------- Date: Tue, 12 Apr 2005 13:56:21 +0300 (EEST) From: M. Minna Laine <minna.laine(a)csc.fi> To: bioclients(a)postit.csc.fi Subject: [BioClients] Bioinformatics-related courses at CSC this spring Dear CSC bioclients, We would like to inform you about the microarray data and sequence analysis courses at CSC this spring: Courses in English: 1. GeneSpring basic course, 19.-20.5.2005 [http://www.csc.fi/suomi/koulutus/kurssi.phtml.en?id=196] 2. GeneSpring advanced course, 3.6.2005 [http://www.csc.fi/suomi/koulutus/kurssi.phtml.en?id=199] 3. Knowledge Discovery Environment (KDE) basic & advanced course, 23.-24.5.2005 [http://www.csc.fi/suomi/koulutus/kurssi.phtml.en?id=198] Course in Finnish: Sekvenssianalyysin perusteet -kurssi järjestetään CSC:llä 25.5.-27.5 päivittäin klo 9.00-16.00. Kurssilla tutustutaan luennoin ja harjoitustöin tietokantahakuihin, sekvenssihakuihin, sekvenssirinnastuksiin ja molekyylisystematiikan menetelmiin lähinnä CSC:n tarjoamia palveluita käyttäen. Kurssin järjestävät Eija Korpelainen, Kimmo Mattila ja Jarno Tuimala. Ilmoittautumislomake ja lisätietoja kurssista löytyy osoitteesta http://www.csc.fi/suomi/koulutus/kurssi.phtml.fi?id=197. Voit ottaa myös yhteyttä luennoitsijoihin: Kimmo Mattila (Kimmo.Mattila[ät]csc.fi, 09-457 2708) ja Jarno Tuimala (Jarno.Tuimala[ät]csc.fi, 09-457 2226). Viimeinen ilmoittautumispäivä on 18.5.2005. Note that the current course is lectured in Finnish. A similar english course, Basics of sequence analysis, is planned for the next autumn. More information will appear at http://www.csc.fi/molbio/opetus/upcoming.html. More information about all upcoming courses arranged by CSC can be found at http://www.csc.fi/suomi/koulutus/index.phtml.en Everybody is warmly welcome to attend! With best wishes, M. Minna Laine

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Finnzymesin kevätnäyttely 6.4. klo 13.30-14.30
by Liisa Raisanen 06 Apr '05

06 Apr '05

Hei, tässä vielä muistin virkistykseksi. Huomatkaa kakkutarjoilu. tv: Liisa Tervetuloa katsastamaan Finnzymesin uusimmat molekyylibiologian tuotteet Perinnöllisyystieteen osaston kahvihuoneeseen keskiviikkona 6.4. klo 13.30-14.30 Esillä mm. seuraavat aiheet: Uudet polymeraasit ja qPCR-kitit Finnzymesilta RNAi -työvalineet New England Biolabsilta ja Invitrogenilta Fluoresoivat merkkiaineet, määrityskitit ja AlexaFluor ^Ö konjugaatit Molecular Probesilta Uuden sukupolven DNA-eristyskitit Invitrogenilta Kakkutarjoilu! Terveisin, Finnzymesin tuotepäälliköt Kaisa Poutanen ja Katja Mäntylä -------- Kaisa Poutanen Product Manager Finnzymes Oy Keilaranta 16 A 02150 Espoo Finland Tel. +358 9 5841 2239 Mobile +358 50 353 3237 Fax +358 9 5841 2200 kaisa.poutanen(a)finnzymes.fi www.finnzymes.fi

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BAPS
by Pekka Pamilo 04 Apr '05

04 Apr '05

Jukka Corander from Helsinki could give a short two-day course in the use of his BAPS program (Bayesian Analysis of Population Structure). As the name of the program says, this program uses genotypic data and classifies samples into genetically homogeneous groups (Hardy-Weinberg groups). It tells how many such groups are found in the data and also calculates estimates of differentiation (FST) among the constructed groups. See below for Jukka's comments concerning the latest release of the program. The only time suitable for Jukka is Monday and Tuesday, May 16-17. If you are interested in participating, let me know (hopefully this week), so I can inform Jukka. Pekka --------------------------------------------------------------------------------- The release of BAPS 3.1 upgrades the software and the main improvements compared with the earlier version 3.0 are: 1. Better usability, several estimation runs can now be processed simultaneously, by providing a vector input to field where the maximum number of clusters is specified. 2. Algorithm improvement, several new search steps have been added. 3. Possibility to use training data for specifying the prior for allele frequencies. 4. Program output has been enhanced. The software is freely available at: http://www.rni.helsinki.fi/~jic/bapspage.html

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Genetics April 2005