Genetics

genetics@lists.oulu.fi

653 discussions

Genetics seminars/meetings Moodle page
by Alina Niskanen 11 Feb '25

11 Feb '25

Hi all, As we discussed in the first genetics meeting in the autumn, I have made a Moodle page for genetics seminars and other related topics for everyone to use. Students can get credits for joining the seminars and discussions according to the instructions on the page. At the moment, there is only the course code for MSc level studies, because I never heard back from the Uniogs person after asking multiple times. I am not sure if this is a problem, but the PhD course code can of course be added later. You can self enroll to the course/page: https://moodle.oulu.fi/course/view.php?id=26130 Password for self enrollment is: genetics_seminars You will be starting in the "student" mode, but everyone at the unit can be upgraded to the "teacher" mode by asking me or Tiina Mattila (tiina.mattila(a)oulu.fi), who also can give the credits for students. I didn't make everyone automatically teachers yet, to avoid accidents. I hope the page will be actively updated and useful to everyone! 🙂 Cheers, Alina

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ANGSD workshop on the 28th and 29th of October
by Stefan Prost 29 Oct '24

29 Oct '24

Hi, I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know. ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics. I will send out some reading for the ones interested! Cheers, Stefan

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Decisions from the genetics chat today
by Alina Niskanen 10 Oct '24

10 Oct '24

Hi all, We had the first genetics chat today and decided to do the following: 1. Set up a Moodle page for a permanent place to gather information (more below) and upcoming events. 2. Start to collect good tutorials etc. on genetics topics on the Moodle page. 3. Start to collect (our) github pages on the Moodle page to exchange scripts. 4. Have somewhat regular monthly meetings on the topics we find interesting, they can be: * journal clubs * presentations on results for discussion * small workshops * just a coffee break to chat about general stuff * You name it! I will set up the Moodle page and start to structure the different sections, but everyone's input is needed! Cheers, Alina

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First genetics gathering!
by Alina Niskanen 07 Oct '24

07 Oct '24

Hi all, Let's gather to the coffee room to chat about the genetics activities we'd prefer. This can be an informal meeting right after the Thursday seminar. Where: biology coffee room When: Thu 10.10. at 13.15 Cheers, Alina

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JP Verta visit
by Tanja Pyhäjärvi 14 Feb '17

14 Feb '17

Dear all, JP Verta will visit us next week. He is an expert in evolutionary analysis of gene expression, especially in conifers and nowadays in sticklebacks.If you wish to meet with him, let me know by the end of this week. He will also give a Thursday seminar. https://scholar.google.com/citations?hl=da&user=LEQBUoAAAAAJ&view_op=list_w… http://www.fml.tuebingen.mpg.de/jones-group.html Best regards Tanja

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More to update
by Tanja Pyhäjärvi 28 Jun '16

28 Jun '16

This one needs updating too. https://wiki.oulu.fi/display/genetiikka/Tutkimusaiheet Tanja Tanja Pyhäjärvi, Academy Research Fellow University of Oulu Room B244 (tel. 48 1521) Mobile +358 50 3504932 email: tanja.pyhajarvi(a)oulu.fi<mailto:tanja.pyhajarvi@oulu.fi>

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Genetics wiki
by Tanja Pyhäjärvi 28 Jun '16

28 Jun '16

Hi, I did some minor updating in Genetics wiki page (removed some links that do not work, update the person list), but there is still a lot of outdated information. Please do your share to keep it updated. If you do not have accession to edit, let me know. Note that there is no really appointed person to maintain the pages, it is up to us all to keep it up to date. I do not know the status of every person, so you can edit it yourself here: https://wiki.oulu.fi/display/genetics/People https://wiki.oulu.fi/display/genetics/Genetics Tanja Tanja Pyhäjärvi, Academy Research Fellow University of Oulu Room B244 (tel. 48 1521) Mobile +358 50 3504932 email: tanja.pyhajarvi(a)oulu.fi<mailto:tanja.pyhajarvi@oulu.fi>

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Postdoc position in plant evolutionary genomics in University of Oulu
by Tanja Pyhäjärvi 28 Jun '16

28 Jun '16

Dear colleagues, I have a postdoc position open for project on evolutionary consequences of haploid selection in plants. I am looking for a person interested in population genetics/evolutionary genomics, with skills in gene expression analysis and bioinformatics. Feel free to advertise in suitable forums. The official announcement: https://www.saimanet.com/certiahome/open_job_view.html?did=5600&jc=1&id=000… Best regards, Tanja Tanja Pyhäjärvi, Academy Research Fellow University of Oulu Room B244 (tel. 48 1521) Mobile +358 50 3504932 email: tanja.pyhajarvi(a)oulu.fi<mailto:tanja.pyhajarvi@oulu.fi>

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Fwd: PhD position on ‘Ecological genomics of local adaptation in maritime pine’ in Bordeaux, France
by Tanja Pyhäjärvi 15 Apr '16

15 Apr '16

Tanja Pyhäjärvi, Academy Research Fellow University of Oulu Room B244 (tel. 48 1521) Mobile +358 50 3504932 email: tanja.pyhajarvi(a)oulu.fi<mailto:tanja.pyhajarvi@oulu.fi> Begin forwarded message: From: Santiago C. González-Martínez <santiago.c.gonzalez.martinez(a)gmail.com<mailto:santiago.c.gonzalez.martinez@gmail.com>> Subject: PhD position on ‘Ecological genomics of local adaptation in maritime pine’ in Bordeaux, France Date: 15 Apr 2016 11:53:01 EEST To: Santiago Gonzalez Martinez <santiago.gonzalez-martinez(a)pierroton.inra.fr<mailto:santiago.gonzalez-martinez@pierroton.inra.fr>> Dear all, I have opened a PhD position at the Bordeaux doctoral school to work on ‘Ecological genomics of local adaptation in maritime pine’ (see enclosed). The PhD topic is associated with two well-funded projects, one from the Initiative of Excellence of Univ. Bordeaux and another one, GenTree, a H2020 European project that will give an international dimension to the student research. I think this is a very nice setting for a young researcher to do its PhD and I am searching for enthusiastic candidates that would like to join our team at Bordeaux. Deadline to deposit candidatures is very short (May 9th) and I would appreciate maximum diffusion of this offer. Thank you and have a good w-e, Santi -- Santiago C. González-Martínez Research Director INRA, UMR1202 BIOGECO: Biodiversity, Genes & Communities 69, route d'Arcachon F-33610 Cestas, France Tlf: ++33(0)557122757 email: santiago.gonzalez-martinez(a)pierroton.inra.fr<mailto:santiago.gonzalez-martinez@pierroton.inra.fr> skype/gmail: santiago.c.gonzalez.martinez web: www.bordeaux-aquitaine.inra.fr/biogeco<http://www.bordeaux-aquitaine.inra.fr/biogeco> personal web: sites.google.com/site/santiagocgonzalezmartinez<http://sites.google.com/site/santiagocgonzalezmartinez/home> ***updated October 2015***

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ASA-aineet
by Hannele Parkkinen 08 Mar '16

08 Mar '16

Hei, nyt on taas aika täyttää ASA-lomakkeet kaikkien jotka ovat työskennelleet vuoden 2012 aikana syöpävaarallisilla aineilla siinä määrin, että ilmoitusvelvollisuus täyttyy. Palauttakaa lomakkeet minulle 28.2. mennessä. t.Hannele

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Genetics