Information on a course in Uppsala in two parts (September and March). This probably overlaps (partly) with the course in Oulu last December. Pekka
Graduate course: Analysis of sequence data (in two parts).
Part I: Basic coalescent theory (Paul Joyce, University of Idaho, USA, and Martin Lascoux, EBC). September 6-10 2004 Part II: Applications (Gil McVean, University of Oxford, UK and Martin Lascoux, EBC). Spring 2005. Tentative date: 14/3-17/3 (this may change later on).
Credits: 4 points (2 for attendance + 2 for homework). If only one part is attended 2 points.
Aim of the course: Introduce the necessary theoretical background to carry out the analysis of DNA sequence data (part 1) and go through various applications (estimation of population recombination rate, detection of recombination hotspots, detection of selection, estimation of past demographics, part 2).
Target group: Students studying evolutionary biology in general, especially those using genetics. The course will also be relevant for students working in gene mapping.
Recommended background: Basic knowledge of genetics, basic knowledge of basic probability and statistics
Content: Lectures, Exercises, Computer based assignments. Simulation and analysis of empirical datasets.
Preliminary outline:
Part I Intro, basic probability, stochastic processes, statistics. The standard coalescent Estimation of parameters. Computationally simple methods. Estimation of parameters. Computationally intensive methods Extension of the coalescent: Recombination and selection graphs
Part II The coalescent: a reminder Modelling and detecting selection Recombination: Estimating the population recombination rate LD and haplotypes. Haplotype blocks Association mapping
Registration: Send an email to Martin Lascoux at Martin.Lascoux@ebc.uu.se before August 1. You can register for only one part, but I strongly recommend attending both as they complement each other. For those coming from other universities please note that we do not arrange housing.
Both Paul and Gil are outstanding teachers. Paul already gave a course at the EBC a few years ago along the same lines. Here is one of the many positive comments on the course: "cheers for a great course which gave me lots of ideas for analysing data and thinking about polymorphism. As I mentioned at the time, I really wish I had gone to such a course when I was a postgrad" (one of the postdoctoral fellow that attended the course).
Welcome!
Martin
Martin Lascoux Program in Conservation Biology & Genetics Evolutionary Biology Centre Uppsala University Norbyvägen 18D 752 36 UPPSALA SWEDEN
Tel: 46 18 471 64 16 Fax: 46 18 471 64 24