Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
Hi,
Some students have a compulsory course (Data Wrangling) the 28th 12:15-16:00.
Cheers,
Juan ________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: 15 October 2024 13:30 To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
Yes, I can organize something separately with them. Unfortunately, I couldn't do it on another day. sorry! ________________________________ From: Juan Galarza Pavia Juan.Galarza@oulu.fi Sent: Tuesday, October 15, 2024 2:10 PM To: Stefan Prost Stefan.Prost@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Some students have a compulsory course (Data Wrangling) the 28th 12:15-16:00.
Cheers,
Juan ________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: 15 October 2024 13:30 To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
Hi,
We have the degree programme coffee on Tuesday 29th October, from 13 to 15 at Tellus Backstage, near YL124. Hopefully everyone can make it there before the workshop!
Cheers, Lumi
________________________________ Lähettäjä: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi käyttäjän Stefan Prost Stefan.Prost@oulu.fi puolesta Lähetetty: tiistai 15. lokakuuta 2024 14.25 Vastaanottaja: Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Aihe: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Yes, I can organize something separately with them. Unfortunately, I couldn't do it on another day. sorry! ________________________________ From: Juan Galarza Pavia Juan.Galarza@oulu.fi Sent: Tuesday, October 15, 2024 2:10 PM To: Stefan Prost Stefan.Prost@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Some students have a compulsory course (Data Wrangling) the 28th 12:15-16:00.
Cheers,
Juan ________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: 15 October 2024 13:30 To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
Hi all and Stefan,
I think it would be ok, if the course is going to be 4 hour in the morning on both days, for example 8-12.
At least I would like to come even it will be crazy days for me.
Cheers, Sam
________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Lumi Viljakainen lumi.viljakainen@oulu.fi Sent: 15 October 2024 15:23 To: Stefan Prost Stefan.Prost@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
We have the degree programme coffee on Tuesday 29th October, from 13 to 15 at Tellus Backstage, near YL124. Hopefully everyone can make it there before the workshop!
Cheers, Lumi
________________________________ Lähettäjä: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi käyttäjän Stefan Prost Stefan.Prost@oulu.fi puolesta Lähetetty: tiistai 15. lokakuuta 2024 14.25 Vastaanottaja: Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Aihe: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Yes, I can organize something separately with them. Unfortunately, I couldn't do it on another day. sorry! ________________________________ From: Juan Galarza Pavia Juan.Galarza@oulu.fi Sent: Tuesday, October 15, 2024 2:10 PM To: Stefan Prost Stefan.Prost@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Some students have a compulsory course (Data Wrangling) the 28th 12:15-16:00.
Cheers,
Juan ________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: 15 October 2024 13:30 To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
Hi,
Unfortunately, the rooms are booked then. I can see if the 30th would work instead of the 28th.
Cheers, Stefan
________________________________ From: Samuel Lam Nok.Lam@oulu.fi Sent: Tuesday, October 15, 2024 3:32 PM To: Lumi Viljakainen lumi.viljakainen@oulu.fi; Stefan Prost Stefan.Prost@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi all and Stefan,
I think it would be ok, if the course is going to be 4 hour in the morning on both days, for example 8-12.
At least I would like to come even it will be crazy days for me.
Cheers, Sam
________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Lumi Viljakainen lumi.viljakainen@oulu.fi Sent: 15 October 2024 15:23 To: Stefan Prost Stefan.Prost@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
We have the degree programme coffee on Tuesday 29th October, from 13 to 15 at Tellus Backstage, near YL124. Hopefully everyone can make it there before the workshop!
Cheers, Lumi
________________________________ Lähettäjä: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi käyttäjän Stefan Prost Stefan.Prost@oulu.fi puolesta Lähetetty: tiistai 15. lokakuuta 2024 14.25 Vastaanottaja: Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Aihe: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Yes, I can organize something separately with them. Unfortunately, I couldn't do it on another day. sorry! ________________________________ From: Juan Galarza Pavia Juan.Galarza@oulu.fi Sent: Tuesday, October 15, 2024 2:10 PM To: Stefan Prost Stefan.Prost@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Some students have a compulsory course (Data Wrangling) the 28th 12:15-16:00.
Cheers,
Juan ________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: 15 October 2024 13:30 To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
Hi,
Yes, that's why we pushed it backwards by an hour, so that people can join!
Cheers, Stefan
________________________________ From: Lumi Viljakainen lumi.viljakainen@oulu.fi Sent: Tuesday, October 15, 2024 3:23 PM To: Stefan Prost Stefan.Prost@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: VS: ANGSD workshop on the 28th and 29th of October
Hi,
We have the degree programme coffee on Tuesday 29th October, from 13 to 15 at Tellus Backstage, near YL124. Hopefully everyone can make it there before the workshop!
Cheers, Lumi
________________________________ Lähettäjä: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi käyttäjän Stefan Prost Stefan.Prost@oulu.fi puolesta Lähetetty: tiistai 15. lokakuuta 2024 14.25 Vastaanottaja: Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Aihe: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Yes, I can organize something separately with them. Unfortunately, I couldn't do it on another day. sorry! ________________________________ From: Juan Galarza Pavia Juan.Galarza@oulu.fi Sent: Tuesday, October 15, 2024 2:10 PM To: Stefan Prost Stefan.Prost@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Some students have a compulsory course (Data Wrangling) the 28th 12:15-16:00.
Cheers,
Juan ________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: 15 October 2024 13:30 To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
Hi,
I was able to shuffle things around and so now the workshop will be on the 29th and 30th of October 2-5pm at YL124.
Cheers, Stefan
________________________________ From: Stefan Prost Stefan.Prost@oulu.fi Sent: Tuesday, October 15, 2024 3:50 PM To: Lumi Viljakainen lumi.viljakainen@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Yes, that's why we pushed it backwards by an hour, so that people can join!
Cheers, Stefan
________________________________ From: Lumi Viljakainen lumi.viljakainen@oulu.fi Sent: Tuesday, October 15, 2024 3:23 PM To: Stefan Prost Stefan.Prost@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: VS: ANGSD workshop on the 28th and 29th of October
Hi,
We have the degree programme coffee on Tuesday 29th October, from 13 to 15 at Tellus Backstage, near YL124. Hopefully everyone can make it there before the workshop!
Cheers, Lumi
________________________________ Lähettäjä: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi käyttäjän Stefan Prost Stefan.Prost@oulu.fi puolesta Lähetetty: tiistai 15. lokakuuta 2024 14.25 Vastaanottaja: Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Aihe: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Yes, I can organize something separately with them. Unfortunately, I couldn't do it on another day. sorry! ________________________________ From: Juan Galarza Pavia Juan.Galarza@oulu.fi Sent: Tuesday, October 15, 2024 2:10 PM To: Stefan Prost Stefan.Prost@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Some students have a compulsory course (Data Wrangling) the 28th 12:15-16:00.
Cheers,
Juan ________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: 15 October 2024 13:30 To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
Hi,
For those attending the workshop, please send me your CSC usernames, so that I can add you to the project. Also, for the ones that took my Genomics in Biodiversity Research course I don't need a username as we are using the same project.
Cheers, Stefan ________________________________ From: Stefan Prost Stefan.Prost@oulu.fi Sent: Tuesday, October 15, 2024 3:50 PM To: Lumi Viljakainen lumi.viljakainen@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Yes, that's why we pushed it backwards by an hour, so that people can join!
Cheers, Stefan
________________________________ From: Lumi Viljakainen lumi.viljakainen@oulu.fi Sent: Tuesday, October 15, 2024 3:23 PM To: Stefan Prost Stefan.Prost@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: VS: ANGSD workshop on the 28th and 29th of October
Hi,
We have the degree programme coffee on Tuesday 29th October, from 13 to 15 at Tellus Backstage, near YL124. Hopefully everyone can make it there before the workshop!
Cheers, Lumi
________________________________ Lähettäjä: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi käyttäjän Stefan Prost Stefan.Prost@oulu.fi puolesta Lähetetty: tiistai 15. lokakuuta 2024 14.25 Vastaanottaja: Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Aihe: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Yes, I can organize something separately with them. Unfortunately, I couldn't do it on another day. sorry! ________________________________ From: Juan Galarza Pavia Juan.Galarza@oulu.fi Sent: Tuesday, October 15, 2024 2:10 PM To: Stefan Prost Stefan.Prost@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Some students have a compulsory course (Data Wrangling) the 28th 12:15-16:00.
Cheers,
Juan ________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: 15 October 2024 13:30 To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
Hi,
You can also apply for a project membership via this link: https://my.csc.fi/project-invitation/6f942b6d-2a85-4faa-9145-d315f89d6fa2 Please, apply as soon as possible as it takes quite a few minutes to take effect.
Cheers, Stefan
________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: Tuesday, October 29, 2024 11:03 AM To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
For those attending the workshop, please send me your CSC usernames, so that I can add you to the project. Also, for the ones that took my Genomics in Biodiversity Research course I don't need a username as we are using the same project.
Cheers, Stefan ________________________________ From: Stefan Prost Stefan.Prost@oulu.fi Sent: Tuesday, October 15, 2024 3:50 PM To: Lumi Viljakainen lumi.viljakainen@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Yes, that's why we pushed it backwards by an hour, so that people can join!
Cheers, Stefan
________________________________ From: Lumi Viljakainen lumi.viljakainen@oulu.fi Sent: Tuesday, October 15, 2024 3:23 PM To: Stefan Prost Stefan.Prost@oulu.fi; Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: VS: ANGSD workshop on the 28th and 29th of October
Hi,
We have the degree programme coffee on Tuesday 29th October, from 13 to 15 at Tellus Backstage, near YL124. Hopefully everyone can make it there before the workshop!
Cheers, Lumi
________________________________ Lähettäjä: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi käyttäjän Stefan Prost Stefan.Prost@oulu.fi puolesta Lähetetty: tiistai 15. lokakuuta 2024 14.25 Vastaanottaja: Juan Galarza Pavia Juan.Galarza@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Aihe: Re: [Genetics] ANGSD workshop on the 28th and 29th of October
Yes, I can organize something separately with them. Unfortunately, I couldn't do it on another day. sorry! ________________________________ From: Juan Galarza Pavia Juan.Galarza@oulu.fi Sent: Tuesday, October 15, 2024 2:10 PM To: Stefan Prost Stefan.Prost@oulu.fi; genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: Re: ANGSD workshop on the 28th and 29th of October
Hi,
Some students have a compulsory course (Data Wrangling) the 28th 12:15-16:00.
Cheers,
Juan ________________________________ From: genetics-bounces@lists.oulu.fi genetics-bounces@lists.oulu.fi on behalf of Stefan Prost Stefan.Prost@oulu.fi Sent: 15 October 2024 13:30 To: genetics@lists.oulu.fi genetics@lists.oulu.fi Subject: [Genetics] ANGSD workshop on the 28th and 29th of October
Hi,
I'm planning to organize a little "Population Genomic Analyses Using ANGSD" workshop on the 28th (1-4pm) and the 29th (2-5pm) at YL124. It won't be a very in-depth workshop, but we'll cover some basics and run some standard analyses (such as PCA, etc.). If you are interested in joining, please let me know.
ANGSD can be used for any genome-wide DNA data, e.g. RADseq, GBS, low and high-coverage whole genome data, etc. It's especially good for low-coverage data, data with quite a bit of missing data or paleogenomics.
I will send out some reading for the ones interested!
Cheers, Stefan
-
Juan Galarza Pavia -
Lumi Viljakainen -
Samuel Lam -
Stefan Prost