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FW: Dekaanin ajankohtaiskatsaus, LTK / Dean's current news, FMed
by Antti Haapalainen 25 Aug '22

25 Aug '22

-----Original Appointment----- From: Jaana Liimatainen <jaana.liimatainen(a)oulu.fi> Sent: torstai 25. elokuuta 2022 8.33 To: Jaana Liimatainen; Jaana Liimatainen; LTK; LTK-idm Cc: Huttu Ari Subject: Dekaanin ajankohtaiskatsaus, LTK / Dean's current news, FMed When: perjantai 26. elokuuta 2022 14.00-15.00 (UTC+02:00) Helsinki, Kyiv, Riga, Sofia, Tallinn, Vilnius. Where: F202, Teams LTK:n dekaanin ajankohtaiskatsaus klo 14.00-14.30 suomeksi, F202 ja Teams FMed's Dean's current news 14.30-15.00 in English, in F202 and Teams ________________________________________________________________________________ Microsoft Teams meeting Join on your computer or mobile app Click here to join the meeting<https://teams.microsoft.com/l/meetup-join/19%3ameeting_YTU5ZTJlOTEtNTE3OC00…> Meeting ID: 392 108 063 404 Passcode: PMozD7 Download Teams<https://www.microsoft.com/en-us/microsoft-teams/download-app> | Join on the web<https://www.microsoft.com/microsoft-teams/join-a-meeting> Or call in (audio only) +358 9 85626307,,133871019#<tel:+358985626307,,133871019#> Finland, Helsinki Phone Conference ID: 133 871 019# Find a local number<https://dialin.teams.microsoft.com/3842a853-a94d-4f5e-b81d-3786eed9ea69?id=…> | Reset PIN<https://dialin.teams.microsoft.com/usp/pstnconferencing> Learn More<https://aka.ms/JoinTeamsMeeting> | Meeting options<https://teams.microsoft.com/meetingOptions/?organizerId=b837850c-0d5e-491c-…> ________________________________________________________________________________

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FW: Kontinkangas Seminar Series, Autumn 2022
by Antti Haapalainen 25 Aug '22

25 Aug '22

From: Pirkko Huhtala <pirkko.huhtala(a)oulu.fi> Sent: torstai 25. elokuuta 2022 9.34 To: fbmm <fbmm(a)lists.oulu.fi>; ltk-all <ltk-all(a)oulu.fi>; bco(a)lists.oulu.fi; hbsdp(a)lists.oulu.fi Subject: Kontinkangas Seminar Series, Autumn 2022 Dear all, Welcome to hear the following guest speakers in Kontinkangas Seminars Series this Autumn. Events are open for everybody and no registration is required. Coffee is served during networking session 20 minutes before the presentation time. Kontinkangas Seminar Series, Autumn 2022 Date and lecture room Speaker Title October 6, 15.15-16 F101 Pekka Katajisto Helsinki Institute of Life Science, HiLIFE Institute of Biotechnology, University of Helsinki and Department of Cell and Molecular Biology, Karolinska Institutet Role of stem cell niche interactions and asymmetric divisions in aging October 20, 15.15-16 H1091 Eoin Cummins University College Dublin, School of Medicine, Ireland Regulation of inflammatory signaling by the physiological gases O2 and CO2 November 3, 15.15-16 101A Sebastian Deindl Department of Cell and Molecular Biology, Uppsala University Illuminating the regulation of gene expression at the single-molecule level November 17, 15.15-16 F202 Yael Nossent Department of Surgery and Laboratory for Experimental Vascular Medicine Leiden University Medical Center, the Netherlands Change of Heart: the Epitranscriptome of Small Non-coding RNAs in cardiovascular disease December 1, 15.15-16 F101 Yvonne Reiss Goethe-Universität Frankfurt am Main, Frankfurt Cancer Institute, Germany Targeting the tumor microenvironment in malignant brain tumors December 8, 15.15-16 F202 Tarja Malm A.I.V. Virtanen Institute for Molecular Sciences, University of Eastern Finland TBA December 13, 12-16 (TBC), 101A BCO Discovery of the year Separate programme TBA Welcome! Note! Do not miss this: Finnish Association for the Study of Obesity (FASO) and Fibrobesity Research Programme on 13 October 2022. Seminar: Obesity and Fibrosis at the Crossroads of Human Health and Disease | University of Oulu<https://www.oulu.fi/en/events/seminar-obesity-and-fibrosis-crossroads-human…> Kind regards Pirkko Huhtala Pirkko Huhtala, PhD Coordinator Biocenter Oulu, University of Oulu e-mail: pirkko.huhtala(a)oulu.fi<mailto:pirkko.huhtala@oulu.fi> tel: +358-294 486101, + 358-40 1897467 Street address: Room 476B, Aapistie 5A, FIN-90220 Oulu Mailing address: PO Box 5000, FIN-90014 University of Oulu, Finland www.oulu.fi/biocenter<http://www.oulu.fi/biocenter>

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Tutkimusdatan hallinnan koulutukset - Training in research data management
by Jaana Liimatainen 24 Aug '22

24 Aug '22

Hyvät tutkijat / Dear Researchers Aalto-yliopiston data-agenttien ja tutkimusdataverkoston tutkimusaineistojen hallinnan ja avoimen tieteen webinaarisarja pidetään jälleen tänä syksynä. Avoimen tieteen hengessä webinaarit ovat kaikille avoimia ja maksuttomia. Syksyn 2022 ohjelma ja ilmoittautumislinkit löytyvät täältä: Avoimen tieteen ja tutkimusdatan hallinnan koulutukset | Aalto-yliopisto<https://www.aalto.fi/fi/palvelut/avoimen-tieteen-ja-tutkimusdatan-hallinnan…>. Suurin osa aikaisempien webinaarien tallenteista on avoimesti saatavilla Youtubesta<https://www.youtube.com/channel/UCGKa3aPAAZLaYqrZnoarDxw>. Aalto University's Data Agents and Research Data Management Network offer training in research data management and open science during autumn 2022. The webinars are open to all, and participation is free. Program for autumn 2022 and registration are here: https://www.aalto.fi/en/services/training-in-research-data-management-and-o…. Most of the earlier webinars are available in Youtube<https://www.youtube.com/channel/UCGKa3aPAAZLaYqrZnoarDxw>. On behalf of the organizers Jaana Jaana O. Liimatainen Koordinaattori, FT Oulun yliopisto Lääketieteellinen tiedekunta PL 5000 90014 Oulun yliopisto puh. 0294 487 459 mobiili 050 590 4561 Jaana.Liimatainen[at]oulu.fi

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Seminar: Obesity and Fibrosis at the Crossroads of Human Health and Disease - see the final programme and book your seat!
by Essi Erkkilä 24 Aug '22

24 Aug '22

Dear all, Everyone is welcome to the Joint Seminar<https://www.oulu.fi/en/events/seminar-obesity-and-fibrosis-crossroads-human…> of the Finnish Association for the Study of Obesity (FASO) and Fibrobesity Research Programme on 13 October 2022. See below the final programme. The event is hybrid and has no registration fees. If you didn't submit an early-bird registration, book your seat now! Event information Time: Thu 13.10.2022 at 08:30 - 16:15 Location: Leena Palotie Hall and online via Zoom Registration: Please register by October 10<https://link.webropolsurveys.com/Participation/Public/8310ae8c-8d21-4067-a2…>. No registration fee. Please note that regardless of the type of participation (on-site or remote) pre-registration is required. [A picture containing text Description automatically generated] Programme 8:30-9:00 Coffee at the lobby (provided) 9:00-9:10 Opening words: Prof. Janne Hukkanen, FASO Vice-Chair, and Prof. Olavi Ukkola, Profi6 Fibrobesity Leader 9:10-11:25 Clinical aspects of fibrosis and obesity Prof. Juhani Junttila, UO: Obesity and Fibrosis in Myocardial Disease Prof. Riitta Kaarteenaho, UO: Pulmonary Fibrosis and Obesity Break (10 min at 10:00-10:10) Associate Prof. Daniela Ungureanu, UO: Obesity and Cancer at the Molecular Level Prof. Janne Hukkanen, UO: Obesity-Induced Hypertension and Sex-Specific Blood Pressure Regulation Prof. Terhi Piltonen, UO: Sex Hormones and Fibrosis 11:25-12:25 Lunch break (at own expenses) 12:25-13:10 Keynote talk Associate Prof. Mari T. Kaartinen, McGill University, Montreal, Canada: Coagulation Factor XIII-A in Adipose Tissue Inflammation and Fibrosis in Obesity 13:10-14:25 Molecular and cellular characteristics of fibrosis and obesity Prof. Jukka Hakkola, UO: Pregnane X Receptor Activation Remodels Liver Metabolism to Promote NAFLD Development in Obese Mice Prof. Peppi Karppinen, UO: Activation of the HIF Pathway as a Treatment Option for Metabolic Dysfunction Adjunct Prof. Justus Reunanen, UO: Metabolic Features of Gut Extracellular Vesicles in Bariatric Surgery Patients 14:25-14:45 Coffee break 20 min (provided) 14:45-16:00 Exercise and urban planning in the prevention of obesity Associate Prof. Arto Hautala, University of Jyväskylä: Individual Responses to Exercise Training Ph.D. Mikko Kärmeniemi, UO: The Built Environment as a Determinant of Physical Activity Prof. Helka-Liisa Hentilä, UO: Urban Planning for Enhancement of Physical Activity: What needs to be changed? 16:00-16:15 Wrap-up and closing words by Prof. Janne Hukkanen Welcome to the Seminar<https://www.oulu.fi/en/events/seminar-obesity-and-fibrosis-crossroads-human…>! On behalf of the Fibrobesity Team, Essi Erkkilä --------------------------------------------------------------------------------------- Essi Erkkilä Communications Specialist, Profi6 Fibrobesity Research Unit for Internal Medicine (Room S5 224) Faculty of Medicine University of Oulu tel. +358 50 521 5852 Twitter: FibroHealthOulu @FibroOulu FibroHealth - Combatting Fibrosis in Chronic Diseases | University of Oulu<https://www.oulu.fi/en/fibrohealth-combatting-fibrosis-chronic-diseases> [cid:image002.jpg@01D8B7C0.76C6BF10]

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REMINDER: Open online lecture, QUPATH: OPEN-SOURCE SOFTWARE FOR BIOIMAGE ANALYSIS AND DIGITAL PATHOLOGY, August 25th at 1 PM
by Sanna Palosaari 24 Aug '22

24 Aug '22

August 25th 13:00 Finnish time Open online lecture: https://oulu.zoom.us/j/64556587648 QuPath: Open-source software for bioimage analysis and digital pathology Reader, Peter Bankhead Institute of Genetics and Cancer University of Edinburgh [cid:image001.jpg@01D8B79C.C9F24A70] Dr Peter Bankhead - Reader Realising the potential of image analysis and AI for biology and pathology is hard, and requires software. Firstly, we need open and adaptable software tools that help specialists in different areas work together to devise meaningful algorithms. We then need user-friendly and accessible software platforms to make these algorithms widely available, so that others can validate and apply them in practice. QuPath (http://qupath.github.io) is free and open-source software designed to help address these needs. Since its release in 2016, QuPath has been downloaded more than 240,000 times and applied in well over 1,000 published studies by groups throughout the world. A growing community of users and developers are now using the platform to create innovative ways of exploring complex biomedical images, with over 2,300 QuPath-related discussions on the Scientific Community Image Forum at https://image.sc. This talk will describe QuPath’s background and current status, what the future holds, and how the software can be useful for a wide range of different groups working with whole slide and microscopy images today. Bio Pete completed his PhD at Queen’s University Belfast, focussing on the analysis of retinal images and calcium signals in retinal arterioles. He then moved to Germany, becoming a postdoc in the Nikon Imaging Center at Heidelberg University where he spent much of his time helping microscope users interpret their imaging data using open-source software. During this time he wrote a bioimage analysis handbook for biologists. This has recently been rewritten and released as a new open, interactive, executable book at https://bioimagebook.github.io. Upon returning to Belfast as a postdoc at the end of 2012, Pete encountered digital pathology for the first time. After trying to apply existing open software tools to whole slide images with limited success, he wrote his own: QuPath. After a short time in industry, Peter is now Reader (Associate Professor) at the University of Edinburgh, where he is building a group dedicated to developing open AI and bioimage analysis methods for pathology and other imaging data. Welcome to join and please feel free to share with colleagues.

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Canceled: LTK:n henkilöstöinfo / Staff Info at the Faculty of Medicine
by Jaana Liimatainen 23 Aug '22

23 Aug '22

Oulun yliopiston hallitus on tänään käsitellyt Lääketieteellisen tiedekunnan talouden tasapainottamissuunnitelmaa. Hallitus ei tehnyt asiasta päätöstä, vaan päätti jatkaa asian käsittelyä. Tasapainottamissuunnitelmasta ei siten ole uutta tiedotettavaa, joten tämä LTK:n henkilöstöinfo siirretään myöhemmin ilmoitettavaan ajankohtaan. The Board of Directors at the University of Oulu decided today to continue discussing the measures to balance the financial situation of the Faculty of Medicine in a later meeting. As there is no new information to report, this Staff Info at the Faculty of Medicine will be postponed. The new date will be announced later. Dekaani/Dean Osmo Tervonen Tervetuloa LTK:n henkilöstöinfoon / Welcome to the Staff Info at the Faculty of Medicine Aihe: Tiedekunnan talouden tasapainottaminen Paikka: Leena Palotie -sali 101A ja Teams Aika: 24.8. klo 14.00-14.30 suomeksi Topic: Balancing the financial situation of the faculty Location: Leena Palotie auditorium 101A and Teams Date: 24th of August at 14.30-15.00 in English Dekaani/Dean Osmo Tervonen ________________________________________________________________________________ Microsoft Teams meeting Join on your computer or mobile app Click here to join the meeting<https://teams.microsoft.com/l/meetup-join/19%3ameeting_NWYxZjFjODktZmNhNi00…> Meeting ID: 363 774 402 397 Passcode: Kik69o Download Teams<https://www.microsoft.com/en-us/microsoft-teams/download-app> | Join on the web<https://www.microsoft.com/microsoft-teams/join-a-meeting> Or call in (audio only) +358 9 85626307,,601620882#<tel:+358985626307,,601620882#> Finland, Helsinki Phone Conference ID: 601 620 882# Find a local number<https://dialin.teams.microsoft.com/3842a853-a94d-4f5e-b81d-3786eed9ea69?id=…> | Reset PIN<https://dialin.teams.microsoft.com/usp/pstnconferencing> Learn More<https://aka.ms/JoinTeamsMeeting> | Meeting options<https://teams.microsoft.com/meetingOptions/?organizerId=b837850c-0d5e-491c-…> ________________________________________________________________________________

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Tyytyväisyyskysely – Tutkimuspalvelut
by Tutkimuspalvelut 23 Aug '22

23 Aug '22

Uudistuneet Tutkimuspalvelut – oletko tyytyväinen? Tutkimuspalvelut uudistettiin organisaatiouudistuksen yhteydessä ja hajallaan olevat resurssit koottiin yhteen laadun, vaikuttavuuden ja tuottavuuden parantamiseksi. Uudistuneissa tutkimuspalveluissa hoidetaan nyt keskitetysti tutkimuslupaprosessi, tutkimussopimukset, taloushallinto, henkilöstöhallinto, tilastotieteen palvelut ja tutkimusten monitorointi. Haluaisimme nyt tietää oletko ollut tyytyväinen uudistukseen ja palveluihimme? Kyselyyn vastaaminen tapahtuu anonyymisti eikä vastaajien henkilöllisyyttä voi tunnistaa. Linkki kyselyyn: https://link.webropolsurveys.com/S/6F39B09A913489DF Toivoisimme sinun vastaavaan kyselyyn 16.9.2022 mennessä. Yhteistyöterveisin Tutkimuspalvelut

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juttukakkua
by Jussi Tuusa 23 Aug '22

23 Aug '22

Hei, kahvihuoneessa tarjolla kakkua hyväksytyn jutun innoittamana. Jussi

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FW: Kliinisen lääketieteen tutkimusyksikön tutkijankoulutuskurssi (ent. PEDEGO-tutkijakoulutus) - ilmoittautuminen avoinna kaikille Oulun yliopistossa kliinistä väitöskirjaa tekeville tutkijoille
by Antti Haapalainen 22 Aug '22

22 Aug '22

From: Eero Kajantie <Eero.Kajantie(a)oulu.fi> Sent: torstai 18. elokuuta 2022 20.54 To: LTK <ltk-staff(a)oulu.fi>; ltk-students(a)oulu.fi Subject: VL: Kliinisen lääketieteen tutkimusyksikön tutkijankoulutuskurssi (ent. PEDEGO-tutkijakoulutus) - ilmoittautuminen avoinna kaikille Oulun yliopistossa kliinistä väitöskirjaa tekeville tutkijoille ________________________________ Hyvät lääketieteellisen tiedekunnan väitöskirjatutkijat, ohjaajat ja muu tutkimusyhteisö, kliinisen lääketieteen tutkimusyksikkö järjestää kaksivuotisen tutkijankoulutuskurssin, joka on suunnattu erityisesti kliinistä väitöskirjaa tekeville tutkijakoulutettaville. Koulutuksen toisen vuoden ilmoittautuminen avautuu nyt kaikille Oulun yliopiston tutkijakoulutettaville (ilmoittautumisessa on tähän asti ollut etuoikeus kurssin ensimmäisen vuoden käyneillä). Kurssin ohjelma on liitteenä. Koska ilmoittautumismahdollisuus alkaa melko myöhään (ensimmäisen opetuskerran jälkeen), tämä huomioidaan kurssin läsnäolovaatimuksissa. Ilmoittautuminen on Pepissä opintojaksotunnuksella 046037J tai 046037J-3001. Opintojaksolle otetaan enintään 30 henkeä ilmoittautumisjärjestyksessä. Pyytäisimme myös ohjaajia ja tutkijakollegoita vihjaamaan kurssista mahdollisesti kiinnostuneille tutkijakoulutettaville. Ystävällisin terveisin Kurssin vastuuhenkilöt Eero Kajantie Elämänkaarilääketieteen professori Terhi Tapiainen Lastentautiopin professori

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Multiple new researcher positions are open in Profi6 Fibrobesity!
by Essi Erkkilä 18 Aug '22

18 Aug '22

Dear all, Profi6 Fibrobesity - Preventing Fibrosis Related to Obesity - is expanding! Currently, there are new open calls for four positions, which are divided as follows. [Graphical user interface Description automatically generated] Four open positions in osteoarthritis and intervertebral disc degeneration research<https://www.oulu.fi/en/news/open-positions-two-postdoctoral-and-two-doctora…> * Professor Ali Mobasheri is looking for two postdoctoral researchers and two doctoral researchers to join his research group in the Research Unit of Medical Imaging, Physics and Technology, Faculty of Medicine. * Postdoctoral researcher in Musculoskeletal Research<https://rekry.saima.fi/certiahome/open_job_view.html?did=5600&lang=en&id=00…> and Doctoral researcher, Faculty of Medicine<https://rekry.saima.fi/certiahome/open_job_view.html?did=5600&lang=en&id=00…>: These two positions are targeted to a project focused on understanding pathogenic mechanisms in osteoarthritis and intervertebral disc degeneration, identifying biomarkers, and developing next-generation biological therapeutics for these diseases. Call deadline: September 18, 2022. * Postdoctoral Researcher in Intervertebral Disc Experimental Therapeutics<https://rekry.saima.fi/certiahome/open_job_view.html?did=5600&jc=1&id=00001…> and Doctoral Researcher in Intervertebral Disc Experimental Therapeutics<https://rekry.saima.fi/certiahome/open_job_view.html?did=5600&jc=1&id=00001…>: Additional two positions are open on an interdisciplinary project focused on the formulation and testing of experimental therapeutics for the treatment of intervertebral disc degeneration and low back pain, including nanotechnology, senolytics, and cell-based gene therapy. Call deadline: September 30, 2022 On behalf of the Fibrobesity Team, Essi Erkkilä --------------------------------------------------------------------------------------- Essi Erkkilä Communications Specialist, Profi6 Fibrobesity Research Unit for Internal Medicine (Room S5 224) Faculty of Medicine University of Oulu tel. +358 50 521 5852 Twitter: FibroHealthOulu @FibroOulu FibroHealth - Combatting Fibrosis in Chronic Diseases | University of Oulu<https://www.oulu.fi/en/fibrohealth-combatting-fibrosis-chronic-diseases> [cid:image002.jpg@01D8B309.1AA506D0]

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