Genetics

genetics@lists.oulu.fi

653 discussions

ABI-esittely
by Pekka Pamilo 02 Jun '03

02 Jun '03

Hei Applied Biosystemsin edustaja Reija Laitinen on keskiviikkona 4.6 Oulussa ja esittelee ABI-sekvenaattoreita ja muita edustamiaan laitteita (esim DNA:n ja RNA:n eristykseen käytettäviä) PT302:ssa alkaen kello 9.15. Esittely liittyy seuraavien kallislaitehankintojen valmisteluun Pekka

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course on molecular methods in population genetics
by Pekka Pamilo 21 May '03

21 May '03

>From: "Craig Primmer" <craig.primmer(a)helsinki.fi> > >Dear population genetics graduate school members and co-coordinators of >other graduate schools, > >Please find below information regarding a course being organised by the >population genetics graduate school entitled 'molecular methods in >population genetics'. I have also attached an A4 version with the same >information for placing on notice boards. Please feel free to forward this >information to others who may be interested. > >All the best > >Craig Primmer > >********************************* >Molecular methods in population genetics > >An intensive postgraduate course to be held at the Viikki Science Park, >University of Helsinki, September 10-12 > >Aims >· To familiarise students with molecular markers available for use in >population genetic research, focussing on newer marker types such as >microsatellites, AFLPs and SNPs. >· To familiarise students with the molecular analysis methods with which >these markers can be analysed. >· To outline the advantages and disadvantages of different molecular markers >and methods for different types of population genetic studies. >· To encourage students to use this information when designing their own >projects. > > >Lecturers >Christian Schlötterer, University of Veterinary Science, Vienna, Austria >Tim Sharbel, Max Planck Institute for Chemical Ecology, Jena, Germany >Gavin Hinten, Dept. of Ecology and Systematics, University of Helsinki >Pekka Pamilo, Dept. of Biology, University of Oulu >Craig Primmer, Dept. of Ecology and Systematics, University of Helsinki >Antti Sajantila, Dept. of Forensic Science, University of Helsinki >Johanna Vilkki, MTT Agrifood Research, Animal Production Institute > >See http://cc.oulu.fi/~biolwww/PopGenSchool/uutisia.html for more details > >Registration >Email craig.primmer(a)helsinki.fi by June 20 if you are interested in >attending the course, with an indication of why you think the course would >be useful for you. Those students accepted will be then be expected to send >a brief description of their project(s) in which molecular methods will be >applied by August 8th, and to then give a 15 minute presentation on their >project at the course. >There is no cost for attending the lectures. Travel and accommodation costs >are also covered for students associated with the Graduate School of >Population Genetics and the Graduate School of Wildlife Biology, >Conservation and Management. > >************************************************* > >------------------------------------------------------------- >Craig Primmer >Academy Fellow >Department of Ecology and Systematics >Division of Population Biology >P.O. Box 65 (Biocentre 3, Viikinkaari 1) >FIN-00014 University of Helsinki >FINLAND > >tel. +358 9 191 57685 >fax. +358 9 191 57694 >email: craig.primmer(a)helsinki.fi >http://www.helsinki.fi/~primmer >-------------------------------------------------------------

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laitekokous
by Pekka Pamilo 05 May '03

05 May '03

Muistutan vielä kokouksesta huomenna tiistaina 6.5 kello 13.00 genetiikan kahvihuoneessa. Aiheena erityisesti laitehankinnat: - genetiikan osuus pienlaiterahasta on 3000 euroa ja sen käyttö pitäisi sopia - kallislaitteista pyydetään perusteltuja esityksiä toukokuussa - muitakin laitetarpeita on hyvä kartoittaa Pekka

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laskin
by Leena Uimaniemi 02 May '03

02 May '03

Jos joku on lainannut Casio-laskintani, niin voisiko palauttaa sen ystävällisesti takaisin laboratoriopöydälleni. Tai jos tiedät sen venyvän jossain hylätynoloisena, voisitko viedä laboratoriopöydälleni. Laskimessa on päällä nimeni. Leena Leena Uimaniemi Dept. of Biology University of Oulu POB 3000 90014 Oulu Finland tel. +358-8-5531220 fax +358-8-5531061 e-mail: Leena.Uimaniemi(a)oulu.fi

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VL: Free Accelrys seminar in Turku on may 6th (fwd)
by Jouni Aspi 02 May '03

02 May '03

>-----Alkuperäinen viesti----- >Lähettäjä: owner-bioverkko(a)csc.fi >[mailto:owner-bioverkko@csc.fi]Puolesta Kimmo Mattila >Lähetetty: 2. toukokuuta 2003 10:28 >Vastaanottaja: bioverkko(a)csc.fi >Aihe: Free Accelrys seminar in Turku on may 6th (fwd) > > > >Hi > >This is just to let you know that, Accelrys is advertising its new >molecular modeling and bioinformatics tools next week in Turu (See bellow). > >It is possible, that CSC will in the future (but not quite soon) >migrate from InsightII to Discover Studio Modeling, so if you have >any comments about the DS Modeling, please let me know. > >Regards, > >Kimmo Mattila > >---------------------------------------------------------------------- > > >here is a reminder regarding the free seminar we are organising in Turku >on May 6th. Are you (or any of your colleagues) interested to attend ? > >The following website provides you with more details about the seminar >(including the agenda). >http://www.accelrys.com/seminars/bio_inc_03/index.html > >Otherwise the attached pdf file is also available (I will fax it to you) : > > >To register, please fill in the form on the website : >http://www.accelrys.com/seminars/bio_inc_03/fin.php#reg > >Please feel free to pass this to any of your colleagues who might be >interested. >I hope to see you there. >Kind regards >Helene. > >================================================= >Hélène Grislin >Academic Sales Account Manager > >Accelrys SARL >Parc Club Orsay Universite >20 Rue J. Rostand >91 898 Orsay Cedex >France >Tel: +33 (0) 169.35.29.91 >Fax: +33 (0) 169.41.99.09 >hgrislin(a)accelrys.com >__________________________________________________________________________ > >Accelrys is a subsidiary of Pharmacopeia Inc. >- formerly known as MSI, Oxford Molecular, Genetic Computer Group (GCG) >and >Synopsys - >__________________________________________________________________________ >NEWS: Accelrys E-Flash is a monthly news service for our registered >customers and other subscribers. The E-Flash includes alerts on the latest >product developments and training events as well as industry and >technology news. >http://www.accelrys.com/eflash/index.php > >

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laitekokous
by Pekka Pamilo 30 Apr '03

30 Apr '03

Geneetikot, Laitehankinnat ovat ajankohtaisia koska - genetiikan osuus pienlaiterahasta on 3000 euroa ja sen käyttö pitäisi sopia - kallislaitteista pyydetään perusteltuja esityksiä toukokuussa - muitakin laitetarpeita on hyvä kartoittaa Näistä voisi jutella tiistaina 6.5 kello 13.00 kahvihuoneessa ja sopia siitä miten edetään.Samalla voi ottaa esille muita mahdollisia yhteisiä asioita. Pekka

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(no subject)
by Laura Kvist 28 Apr '03

28 Apr '03

Hi you all, Me and Outi were lucky in the science lottery, which we will celebrate by offering some cakes today about at 1 pm. Welcome, Laura ************************************************************** Dr. Laura Kvist Department of Biology University of Oulu Linnanmaa 90014-Oulu Finland e-mail laura.kvist(a)oulu.fi/ laura.kvist(a)csc.fi phone: +358-8-5531802 fax: +358-8-5531061 **************************************************************

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BigDyeTerminator Kevättarjous! (fwd)
by Minna Ruokonen 16 Apr '03

16 Apr '03

---------- Forwarded message ---------- Date: Wed, 16 Apr 2003 12:53:38 +0200 From: Finland Office <Finland.Office(a)eur.appliedbiosystems.com> Subject: BigDyeTerminator Kevättarjous! Hyvä asiakkaamme, Nyt juhlitaan pyhien välillä! Pääsiäisestä Juhannukseen kaikki BigDye Terminator - sekvensointikitit KOLME KAHDEN HINNALLA eli säästät -33%. Tarjous koskee 100, 1000 ja 5000 rxn kittejä ja kaikkia versioita. Haluamme kuitenkin muistuttaa versioiden 1.0, 2.0 ja 3.0 valmistuksen lakkauttamisesta ja rohkaisemmekin teitä siirtymään versioihin 1.1 ja 3.1. Oheisesta linkistä löydätte paljon tietoa näistä uusimmista versiosta, mm. protokollat, esimerkki dataa jne. Lisätietoja kampanjasta saatte soittamalla asiakaspalveluumme 09 - 693 794 27 Elina Airaksinen tai Eeva Westbeck. Tilaukset voitte tehdä joko faksilla (09-693 794 26), puhelimitse tai sähköpostilla finland_order(a)eur.appliedbiosystems.com Tiedoksi myös kaikille teille, joilla on kapasiteettiongelmia PCR-laitteillanne; myös PCR cyclerit ovat mukana kovassa kevät/kesä hintatuuletuksessa. Lisää tietoa laitteistamme sekä kampanjahinnat saatavilla asiakaspalvelustamme. Linkki BigDye sivuille: http://info.appliedbiosystems.com/bigdye Iloista pääsiäistä! (Embedded image moved to file: pic18651.pcx) Elina, Eeva ja Reija Applied Biosystems Puh 09 - 693 794 27 Fax 09 - 693 794 26 http://europe.appliedbiosystems.com

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Seuraava CSC:n bioperuskurssi pidetään 13.-14.5. (fwd)
by Minna Ruokonen 16 Apr '03

16 Apr '03

---------- Forwarded message ---------- Date: Tue, 15 Apr 2003 14:13:20 +0300 (EEST) From: Kimmo Mattila <kkmattil(a)csc.fi> To: bioscience(a)csc.fi Subject: Seuraava CSC:n bioperuskurssi pidetään 13.-14.5. Seuraava biolaskennan peruskurssi pidetään CSC:llä 13.-14.5. Kaksipäiväisellä kurssilla käydään läpi CSC:n palvelimilla olevien sekvenssianalytiikkapalveluiden käytön perusteet. Käsiteltäviä aiheita ovat mm. - SRS-palvelin ja sekvenssitietokannat - EMBOSS-ohjelmiston käyttö WWW- ja unix-ympäristöissä - BLAST-haut Gepardi-palvelimella - monen sekvenssin rinnastus ClustalW-ohjelmalla - Phylip-fylogenetiikkaohjelmisto Kurssin luennoidaan suomeksi. Lisätietoa ja ilmoittautumislomakkeen löydät osoitteesta: http://www.csc.fi/molbio/opetus/bioperus.html ------------------------------------------------------------------------------------------- The next biocomputing basic course will be held on May 13th-14th. The course gives an introduction to the sequence analysis services of CSC. The course is lectured in Finnish. More information about the course can be found form url: http://www.csc.fi/molbio/opetus/bioperus.html --------------------------------------------------------------- Kimmo Mattila, sovellusasiantuntija, Tiedetuki, CSC PL 405 02101 Espoo, puh 09 457 2708 , fax (09) 457 2302 CSC on tieteen tietotekniikan keskus, www.csc.fi, s-posti: kimmo.mattila(a)csc.fi Kimmo Mattila, application scientist, Science Support, CSC P.O. Box 405 02101 Espoo, Finland, tel +358 9 4572708, fax +358 9 4572302 CSC is the Finnish IT Center for Science, www.csc.fi, e-mail: kimmo.mattila(a)csc.fi ---------------------------------------------------------------

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PCR machine
by Minna Ruokonen 09 Apr '03

09 Apr '03

Hi, Our PCR machine (used by all groups at the genetics and by some groups from the zoology & botany, as well as during the courses) is getting old and there's a need for a new machine in the near future (provided that there will be funding available). If you have special requirements or want to have an influence on what kind of a machine would be useful for your purposes, let me know (preferably during this week) or join us in the genetics coffee room (3rd floor) at 13 today. Please, forward the message if you know others who may be interested. Here's some wishes that have been discussed so far: -two blocks (two users) -gradient PCR (possibility to use different temperatures for different tubes during the same run: good e.g. for optimisation) -possibility to use either plates or tubes Presently block B of the PTC is out of order, but will be fixed later this week (requires a component which costs 4000 EUR!), block A should be OK. Matti suggested that in the future we should preferentially take the PCR reactions away from the machine when the programme is finished, keeping the machine on e.g. overnight is an additional strain for the machine. However, this means that there will be less potential users/day. Cheers, Minna = = = = = = = = = = = = = = = = = = = Minna Ruokonen = = Department of Biology = = University of Oulu = = POB 3000 = = FIN-90014 University of Oulu = = FINLAND = = = = minna.ruokonen(a)oulu.fi = = +358-(0)8-553 1802 (office) = = +358-(0)8-553 1061 (fax) = = +358-(0)40-7355770 (mobile) = = = = = = = = = = = = = = = = = = =

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Genetics