Genetics

genetics@lists.oulu.fi

653 discussions

graduate students´ teaching
by Helmi Kuittinen 19 Sep '12

19 Sep '12

Hi genetics graduate students, as you know each of you need to participate in teaching as a part of your work (appr. 48 h during the whole period of your studies if you are get salary, half of this if you have a grant (=you do not pay tax)). I have been coordinating this, but for the last winter (11-12) I do not have any records regarding this. So, could you please send me a message if you have been teaching last winter, and tell how many hours you did and in which course. Also, if you are teaching this semester, let me know. This autumn there is probably a need for a teacher in the course Practicals in Molecular methods I. If you still need to do some teaching and are interested in teaching in this course, please let me know. Regards, Helmi Kuittinen

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Genetics seminar 20.9 12:15
by Tanja Pyhajarvi 06 Sep '12

06 Sep '12

Hi everyone! regular Genetics seminars start this fall on Thursday 20.9. 12:15 (location TBA). My suggestion is to have them about every other week, but adjusted so that they will not overlap with Department's Thursday seminars. I hope somebody from each research group would present their research or bring a visitor to present this fall. I have volunteered to present and Lumi Viljakainen has also promised to present her studies. Please contact me, if you want to present or have a paper etc that you want to discuss with the genetics group. So mark your calendars and don't be shy! My suggestion is to start by discussing potential general issues and then the recently published ENCODE project that is relevant for everyone in genetics. http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html Recent blog post: http://genomeinformatician.blogspot.fi/2012/09/encode-my-own-thoughts.html Best regards, Tanja Tanja Pyhäjärvi University of Oulu, Department of Biology Room PT 312 (tel. 48 1521) Mobile +358 50 3504932 email: tanja.pyhajarvi(a)oulu.fi

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remontin aikaiset laboratoriotilat/Lab facilities during renovation
by Helmi Kuittinen 27 Aug '12

27 Aug '12

Hei geneetikot, maanantaina on tarkoitus mennä Tuulikin kanssa katsomaan korvaavia laboratoriotiloja laitesijoittelun kannalta, mutta ajasta ei vielä ole tarkempaa tietoa. Ilmoita jos olet kiinnostunut lähtemään mukaan. Hi geneticists, if you are interested to go to see on Monday the lab we are going to move next year, and say your opinion on the placement of the lab equipment, please let me know! Helmi

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genetiikan opetuslaitteet
by Helmi Kuittinen 23 Aug '12

23 Aug '12

Geneetikot! Laitan alla olevan viestiketjun vielä yleiseen jakoon, eli jos kenelläkään geneetikolla on ajatuksia opetuslaitteista, niin kertokaa! t. Helmi ________________________________________ Lähettäjä: Helmi Kuittinen Lähetetty: 23. elokuuta 2012 14:14 Vastaanottaja: Heidi Aisala Cc: Minna Ruokonen; Lumi Viljakainen; Esa Aalto Aihe: VS: VS: muistitus LuTK:n infrarahasta Piko olisi tietysti hyvä kun se on niin nopea, eikö niin? toisaalta sitten PCR:rät pitää optimoida sille. siinäpä olisi hyvä tehtävä molekurssille. Dokumenttikameraidea on minusta hyvä. En tosiaan tiedä tuleeko sellainen joka tapauksessa. Mutta jos ei tule niin sitähän voisi nyt hakea. -Helmi ________________________________________ Lähettäjä: Heidi Aisala [heidiais(a)cc.oulu.fi] Lähetetty: 23. elokuuta 2012 13:30 Vastaanottaja: Helmi Kuittinen Cc: Minna Ruokonen; Lumi Viljakainen; Esa Aalto Aihe: Re: VS: muistitus LuTK:n infrarahasta Miten olisi esim. sellainen Finnzymesin PCR-laite Piko? Sellainen on tietääkseni kovassa käytössä esim. kasvigenetiikan labrassa, mutta voisiko samanlaiselle olla käyttöä kursseillakin? http://www.finnzymes.com/products/piko/piko_cyclers.html Myös dokumenttikamera tai vastaava olisi hyvä hankinta opetuslabraan. Ainakin siitä oli paljon iloa Joensuussa, kun pystyi näyttämään kuvia kirjasta ym. En sitten tiedä, tulevatko sellaiset välineet joka tapauksessa opetustiloihin remontin yhteydessä. Heidi On Thu, 23 Aug 2012, Helmi Kuittinen wrote: > Hei, > > v. 2011 hankittiin opetusinfrasta ef-laitteita ja mikrosentrifuugeja. Dataprojektori ja vaaka hoituivat muistaakseni myös jotenkin. Edellisestä hausta jäi siis saamatta listallamme ollut inkubaattori. Laitan oheen dokumentin joka liittyy siihen. Tarvitaanko sitä yhä? Mitä muuta tarvitaan? > > > > Ne jotka on olleet viime vuonna Molekyylimenetelmien kurssilla tai genetiikan perusteiden kurssilla opettamassa tietävät parhaiten missä on tällä hetkellä puutteita. Ilmoittakaa näkemyksenne pian minulle. > > > > t. Helmi > > > > > > ________________________________ > Lähettäjä: Outi Savolainen > Lähetetty: 23. elokuuta 2012 11:32 > Vastaanottaja: Helmi Kuittinen > Cc: Minna Ruokonen; Heidi Aisala (heidi.aisala(a)oulu.fi); Lumi Viljakainen; Esa Aalto > Aihe: FW: muistitus LuTK:n infrarahasta > > Helmi, > voisitkohan Sinä katsoa tätä asiaa geneetikkojen opetuksen osalta. Osaako Minna mainita lisää tarpeita opetukseen? Tai muut tutkijat. Asiaan on aika vähissä. > > Outi > > From: biolaitos-bounces(a)lists.oulu.fi [mailto:biolaitos-bounces@lists.oulu.fi] On Behalf Of Seppo Saarela > Sent: 21. elokuuta 2012 13:57 > To: Biolaitos > Subject: [Biolaitos] muistitus LuTK:n infrarahasta > > Hei, > muistutan vielä, että tiedekunnan infrarahan hakuaika on päättymässä 31.8.2012. Hakuaika alkoi jo 13.6. Käykää hakemassa asiasta tietoa ja hakulomake tiedekunnan sivuilta. Rahaa on jaettavana kaikkiaan 170 000 euroa, joten se on tarkoitettu pienten laitteiden hankintaan. Yliopiston infrarahasta hankittavien laitteiden hankintahinnan alaraja on 80 000 euroa. Se tulee hakuun aivan lähiaikoina. > > Mikäli päätätte hakea näitä rahoja, kannattaa asiasta olla ennakkoon yhteydessä Jari Oksaseen. Hän osaa neuvoa, millaisiin hankkeisiin rahaa voidaan myöntää. Jari toki voi sähköpostitsekin ohjeistaa laitoksen henkilökuntaa. > > Terveisin > Seppo >

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baby gift for Sonja
by ulla.kemi＠oulu.fi 14 May '12

14 May '12

Hi, Sonja Kujala got her third daughter on 1st of May. If you wish to participate the many collection for the baby gift, you can find it from Soile Alatalo (PT310) until 25th of May. Cheers, Ulla ------------- Ulla Kemi University of Oulu, Finland Department of Biology Plant Genetics Group email: ulla.kemi(a)oulu.fi tel: +358-8-5531501 gsm: +358-50-3743293

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Re: [Genetics] Fwd: Genetics seminar Jaakko Lumme on May 10th at 12
by Outi Savolainen 09 May '12

09 May '12

Hi all, recall that next genetic seminar is on May 10th, with Jaakko Lumme giving a presentation (title to be announced). Outi

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Fwd: Genetics seminar
by Lumi Viljakainen 23 Apr '12

23 Apr '12

Hi all, please find here a presumably interesting paper for us to read and discuss at the genetics seminar on Thursday at 12 .15-13.00 at HU111. I sent this to some people already now, from all groups. Lumi promised to send to the whole list. This is about studying 20 full genomes of sticklebacks. Sorry for being so late, Let us also discuss some general matters for geneticists. regards, Outi Outi Savolainen Department of Biology and Biocenter Oulu FIN-90014 University of Oulu +358(8)5531782 +358405168900 outi.savolainen(a)oulu.fi

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renovation
by Minna Ruokonen 27 Mar '12

27 Mar '12

Dear all, Most of you have probably seen the rough plan for the facilities after renovation: now the architects are coming to the planning process and the plan starts getting more detailed. For that purpose, I would like to get your views on the lab floor (2nd floor in the plan, a new drawing in the coffee room). Everything is still possible, so don't hesitate to point weaknesses or invent missing facilities. The plan has not yet been edited with respect of separating walls, so any wall can be knocked down still. Overall, we should discuss: -plant and animal physiology are planning to allocate some lab facilities for teaching (will be used in research when not courses going on): do we need anything similar? I think that we have mostly used PT101 and rarely come to our labs for teaching purposes nowadays. But if such place would be useful, we should claim it now. Teaching classes will be in the first floor mainly, but in physiology they are using expensive research equipment in some courses, so the students have to come to the machines. -how do the research groups want to arrange their lab place, one big lab or a couple of smaller ones? How many people and square meters approximately (examples: PT311 17,6 m2 PT325 34,2 m2 PT333 46,5 m2 PT309+310 70,2 m2)? -how many lab tables are needed per each group (allocated by user, e.g. for post-doc, PhD student, undergraduate, technician)? -special requirements for lab facilities (e.g. semi clean lab will be included, separate RNA lab was suggested by one person: how many of you would use this in the long run?), special functions/procedures, noisy equipment, smelly chemicals etc. -Hannele/Soile: special requirements related to ABI -anything else to be considered? Remember that the basic idea is that those kind of equipment used by more or less everybody will be concentrated on one/a couple of rooms so that their use is as flexible as possible (PCR machines, electrophoresis, PCR laminars etc.). Storage space will be increased a lot. Coldrooms/-20 rooms/-80 freezers will be concentrated, small -20 freezers for everyday chemicals will remain in each lab. Flies will go to the first floor breeding unit, so don't have to be considered right now. Also, dish washing facilities will be considered separately. I hope you'll let me know within a week or so. I can't come and ask everybody, so please, show some initiative here. Otherwise you will not be heard :( Cheers, Minna Minna Ruokonen Department of Biology POBox 3000 FI-90014 University of Oulu FINLAND minna.ruokonen(a)oulu.fi +358 (0)8 5531807 (office) +358 (0)8 5531061 (fax) http://cc.oulu.fi/~mruokone/ http://www.flcrp.org/

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työpaikka
by Minna Ruokonen 22 Mar '12

22 Mar '12

Joensuussa yliopistotutkijan paikka geneetikolle (senior research fellow position open in Joensuu for a geneticist, Finnish skills required), Minna http://www.uef.fi/uef/avoimet-tyopaikat1?p_p_id=101_INSTANCE_lo5M&p_p_lifec… Minna Ruokonen Department of Biology POBox 3000 FI-90014 University of Oulu FINLAND minna.ruokonen(a)oulu.fi +358 (0)8 5531807 (office) +358 (0)8 5531061 (fax) http://cc.oulu.fi/~mruokone/ http://www.flcrp.org/ ________________________________ From: Tommi Nyman [mailto:tommi.nyman@uef.fi] Sent: Thursday, March 22, 2012 3:25 PM To: Minna Ruokonen Subject: Joensuu Elämänne tilaisuus päästä Joensuuhun: http://www.uef.fi/uef/avoimet-tyopaikat1?p_p_id=101_INSTANCE_lo5M&p_p_lifec… Tmi ---------------------------------------------------------------------------------- Tommi Nyman Institute of Systematic Botany University of Zürich Zollikerstrasse 107 CH-8008 Zürich Switzerland Department of Biology University of Eastern Finland P.O. Box 111 FI-80101 Joensuu Finland Phone: +41 78 668 9056 and +358 40 520 6540 (mobile) E-mail: Tommi.Nyman(a)systbot.uzh.ch and Tommi.Nyman(a)uef.fi Homepage: http://wanda.uef.fi/biologia/nyman ----------------------------------------------------------------------------------

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Renovation, plans
by Minna Ruokonen 14 Mar '12

14 Mar '12

Hi all, The concept-level plan related to the use of space after renovation at the department is on the coffee room table. We have a meeting concerning the plan tomorrow at noon, so if you have comments, please let me know before that. Cheer, Minna Minna Ruokonen Department of Biology POBox 3000 FI-90014 University of Oulu FINLAND minna.ruokonen(a)oulu.fi +358 (0)8 5531807 (office) +358 (0)8 5531061 (fax) http://cc.oulu.fi/~mruokone/ http://www.flcrp.org/

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Genetics